CATH Domain: 1fr3A00 XML data for domain: 1fr3A00

Molscript image for 1fr3A00
1fr3A00
PDB coordinates for domain 1fr3A00

PDB 1fr3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.3
2.40.50.100.3.1
2.40.50.100.3.1.1
2.40.50.100.3.1.1.1
2.40.50.100.3.1.1.1.1

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Segment boundaries for domain 1fr3A00

Chopping figure for domain 1fr3A00
DomainStart PDB ResidueStop PDB Residue
1fr3A00 1 67

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 2.40.50.100.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1b9mA03 88.26 Transcriptional regulator modEMolybdate transport system regulatory proteinEscherichia coli K-12 2.40.50.100 70 17 81 1.84 2.26
3d31A03 88.03 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.100 71 25 84 1.28 1.51
1g29102 85.28 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 15 67 1.12 1.67
1cukA01 84.03 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 9 82 3.41 4.15
1b9mB02 83.53 Transcriptional regulator modEMolybdate transport system regulatory proteinEscherichia coli K-12 2.40.50.100 72 23 76 3.48 4.56
2zteA01 83.45 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 15 82 3.36 4.09
1oxxK02 83.08 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 15 64 1.46 2.27
3tssA02 82.18 Toxic shock syndrome toxin-1Staphylococcus aureus 2.40.50.110 71 10 73 3.22 4.40
1hh2P02 81.91 N utilization substance protein AThermotoga maritima 2.40.50.140 63 11 80 3.05 3.78
1ty0A02 81.52 Streptococcus pyogenesExotoxin J 2.40.50.110 75 4 72 3.30 4.58
2r7dA03 81.14 Exoribonuclease II [EC:3.1.13.1]Ribonuclease II family proteinDeinococcus radiodurans 2.40.50.140 59 8 71 2.59 3.62
1i8dA01 80.19 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 14 67 3.12 4.63
2qgqA02 79.24 Thermotoga maritimaRibosomal protein S12 methylthiotransferase rimO 2.40.50.140 59 11 70 3.26 4.65
1y14D02 78.14 Pyrimidine metabolismNuclear-transcribed mRNA catabolic process, exonucleolyticCytoplasmic mRNA processing bodyPurine metabolismPositive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.40.50.140 87 4 63 2.86 4.52
1i8dC02 73.99 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 10 59 2.95 4.99
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fr3A00
MKISGRNKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATEMEVLK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fr3A00
MKISGRNKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATEMEVLK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:50

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"