CATH Domain: 1fpoA01 XML data for domain: 1fpoA01

Molscript image for 1fpoA01
1fpoA01
PDB coordinates for domain 1fpoA01

PDB 1fpo, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.110 Gene3D
1.10.287.110.2
1.10.287.110.2.1
1.10.287.110.2.1.1
1.10.287.110.2.1.1.1
1.10.287.110.2.1.1.1.1

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Segment boundaries for domain 1fpoA01

Chopping figure for domain 1fpoA01
DomainStart PDB ResidueStop PDB Residue
1fpoA01 1 79
1fpoA02 80 171

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.10.287.110.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bvoB01 88.28 Molecular chaperone HscBHomo sapiensMitochondrionIron-sulfur cluster co-chaperone protein HscB, mitochondrial 1.10.287.110 97 37 74 1.29 1.74
2qsaA00 85.12 Caenorhabditis elegansDnaJ homolog dnj-2 1.10.287.110 92 21 73 2.19 2.96
2fb5A01 81.42 Bacillus cereus ATCC 14579Hypothetical Membrane Spanning Protein 1.10.287.770 72 8 70 3.00 4.23
1p49A02 80.66 LysosomeSteryl-sulfataseMicrosomeSteryl-sulfatase [EC:3.1.6.2]Plasma membrane 1.10.287.550 59 6 60 1.78 2.93
1skvA00 80.43 Protein D-63Sulfolobus virus 1 1.10.287.660 62 6 60 2.00 3.29
1r73A00 79.18 RibosomeThermotoga maritimaLarge subunit ribosomal protein L2950S ribosomal protein L29 1.10.287.310 66 12 77 3.45 4.47
1vq8V00 78.68 RibosomeLarge subunit ribosomal protein L29Haloarcula marismortui50S ribosomal protein L29P 1.10.287.310 65 3 64 2.79 4.32
1wazA00 78.04 Morganella morganiiMerF 1.10.287.910 46 10 58 2.74 4.71
1jm0A00 77.81 1.20.5.420 48 10 60 2.98 4.90
2oyqA04 77.39 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 4 62 2.86 4.61
1sf9A01 76.87 Bacillus subtilisUncharacterized protein yfhH 1.10.287.880 64 6 60 2.72 4.48
2py5A04 72.69 DNA polymeraseBacillus phage phi29 1.10.287.690 36 5 45 2.06 4.52
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fpoA01
MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fpoA01
MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:34

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"