CATH Domain: 1fp2A01 XML data for domain: 1fp2A01

Molscript image for 1fp2A01
1fp2A01
PDB coordinates for domain 1fp2A01

PDB 1fp2, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.12
1.10.10.10.12.1
1.10.10.10.12.1.1
1.10.10.10.12.1.1.1
1.10.10.10.12.1.1.1.1

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Segment boundaries for domain 1fp2A01

Chopping figure for domain 1fp2A01
DomainStart PDB ResidueStop PDB Residue
1fp2A01 8 103
1fp2A02 104 352

Structural Neighbourhood (40 entries)

There are 40 matching structural neighberhood comparisons for CATH ID 1.10.10.10.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 40 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3i53B01 88.30 O-methyltransferaseStreptomyces carzinostaticus subsp. neocarzinostaticus 1.10.10.10 91 17 80 1.83 2.28
1fp1D01 86.93 Medicago sativaIsoliquiritigenin 2'-O-methyltransferase 1.10.10.10 105 20 88 2.23 2.52
2r3sB01 85.79 1.10.10.10 76 28 79 2.52 3.18
2f2eA01 81.63 Pseudomonas aeruginosaPutative uncharacterized protein 1.10.10.10 89 10 73 3.25 4.39
1stzA01 81.44 Thermotoga maritimaHeat-inducible transcription repressor hrcAHeat-inducible transcriptional repressor 1.10.10.10 85 11 73 2.46 3.33
1yg2A01 81.42 Vibrio cholerae pathogenic cycleVibrio choleraePadR family transcriptional regulator, regulatory protein AphAPutative uncharacterized protein 1.10.10.10 79 8 65 3.27 4.98
3ctaA01 81.10 Riboflavin metabolismRiboflavin kinaseRiboflavin kinase, archaea type [EC:2.7.1.161]Thermoplasma acidophilum 1.10.10.10 84 11 67 2.09 3.09
2jt1A00 81.09 PefI proteinSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 71 15 65 2.38 3.63
1qbjC00 80.82 CytoplasmNucleolusHomo sapiensDouble-stranded RNA-specific adenosine deaminaseBase conversion or substitution editing 1.10.10.10 66 15 66 3.06 4.59
1w1wE00 80.74 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 8 69 2.13 3.05
1hstA00 80.62 Histone H1/5Gallus gallusHistone H5 1.10.10.10 74 12 68 3.30 4.80
3elkB00 80.47 Putative uncharacterized protein Ta0346Thermoplasma acidophilum 1.10.10.10 98 9 71 3.36 4.70
3f6oB00 80.43 Rhodococcus jostii RHA1Probable transcriptional regulator, ArsR family protein 1.10.10.10 91 7 78 3.67 4.70
2pg4A00 80.43 Aeropyrum pernixPutative uncharacterized protein 1.10.10.10 90 15 76 2.60 3.42
3f6vA00 80.17 Rhodococcus jostii RHA1Possible transcriptional regulator, ArsR family protein 1.10.10.10 86 5 66 2.81 4.21
1in4A02 80.07 Holliday junction DNA helicase RuvBThermotoga maritimaHomologous recombinationHolliday junction ATP-dependent DNA helicase ruvB 1.10.10.10 73 16 67 2.20 3.25
2p8tA01 79.92 Pyrococcus horikoshiiPutative uncharacterized protein PH0730 1.10.10.10 75 17 61 2.45 3.99
2hr3D02 79.81 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 61 16 63 2.25 3.54
2heoA00 79.69 Mus musculusLeft-handed Z-DNA bindingZ-DNA-binding protein 1 1.10.10.10 59 13 61 2.06 3.35
1u5tB02 79.42 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 69 14 66 3.20 4.80
1mkmB01 79.18 Thermotoga maritimaTranscriptional regulator, IclR family 1.10.10.10 76 14 68 3.12 4.54
2dtrA01 79.04 DtxR family transcriptional regulator, Mn-dependent transcriptional regulatorDiphtheria toxin repressorCorynebacterium diphtheriae 1.10.10.10 71 9 69 2.82 4.04
1s3jA02 79.02 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.10.10.10 62 14 60 2.00 3.31
1lvaA02 78.92 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 69 10 65 2.57 3.92
2jtvA00 78.50 Rhodopseudomonas palustrisPutative uncharacterized protein 1.10.10.10 65 9 61 2.15 3.50
2o0yB01 78.35 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 64 15 66 3.13 4.70
1dpuA00 78.19 DNA-dependent DNA replicationReplication protein A 32 kDa subunitNucleotide excision repairDNA replicationReplication factor A2 1.10.10.10 69 13 69 3.12 4.47
1lvaA04 77.97 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 60 16 62 2.29 3.66
1on2A01 77.00 Bacillus subtilisTranscriptional regulator mntR 1.10.10.10 72 13 70 3.10 4.38
2hoeA01 76.73 Thermotoga maritimaTranscriptional regulator, XylR-related 1.10.10.10 57 15 56 1.73 3.08
1xb4B02 76.41 Protein targeting to vacuoleESCRT-II complex subunit VPS25Saccharomyces cerevisiaeESCRT II complexVacuolar protein-sorting-associated protein 25 1.10.10.10 75 9 69 3.43 4.91
1jhfA02 76.21 Repressor LexA [EC:3.4.21.88]TranscriptionDNA bindingLexA repressorTranscription repressor activity 1.10.10.10 69 15 69 3.28 4.70
2fnaA03 76.12 Sulfolobus solfataricusPutative uncharacterized protein 1.10.10.10 72 9 67 3.27 4.83
1bbyA00 75.80 Basal transcription factorsGeneral transcription factor IIF subunit 2General RNA polymerase II transcription factor activityHomo sapiensTranscription initiation factor TFIIF beta subunit 1.10.10.10 69 8 67 2.95 4.36
3jtgA01 75.59 ETS-related transcription factor Elf-3E74-like factor 3/5Mus musculusSequence-specific DNA binding transcription factor activityEmbryo development 1.10.10.10 85 10 67 3.07 4.53
2fmlB03 75.24 MutT/nudix family proteinEnterococcus faecalis 1.10.10.10 61 14 56 2.32 4.12
1w4mA00 74.93 Soluble fractionInhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathwayHemopoietic progenitor cell differentiationActin cytoskeleton reorganizationRegulation of cell diameter 1.10.10.10 95 5 63 2.84 4.47
3c18A03 74.73 Exiguobacterium sibiricum 255-15Putative uncharacterized protein 1.10.10.10 54 14 48 2.19 4.47
1duxC00 74.41 ETS domain-containing protein Elk-1Positive regulation of transcription from RNA polymerase II promoterPrion diseasesInsulin signaling pathwayEndometrial cancer 1.10.10.10 86 6 69 3.28 4.70
1s6lA01 72.46 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 15 54 2.27 4.19
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Displaying entries 1 to 40 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fp2A01
RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII
TKEEESYALTVASELL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fp2A01
MASSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAH
NGFFEIITKEEESYALTVASELL
BLAST against CATH

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Domain History Events (7)

Domain assigned by lewis on 09 Jan 2007 13:16

Assigning domain 1fp2A01 to 1.10.10.10 (as agreed with the CATH update team) after the chain has been rechopped. The reason is that the domain is very similar to the old domain 1fp2A02 (from the previous chopping at "Sun Mar 5 16:34:22 2006") which was in 1.10.10.10 at the time the chain was unchopped.

Flow stage update by auto on 15 Dec 2006 07:35

No satisfactory AssignClose result found.

Flow stage update by auto on 15 Dec 2006 07:33

No in_process hits for Domain "1fp2A01" ready to be processed

Flow stage update by auto on 15 Dec 2006 07:33

NW result present for Domain "1fp2A01"

Flow stage update by auto on 14 Dec 2006 15:49

All required files are present for Domain "1fp2A01"

Flow stage update by auto on 13 Dec 2006 19:36

Beginning processing for Domain "1fp2A01"

Insertion by cuff on 13 Dec 2006 16:18

nice batch of choppings