CATH Domain: 1fnoA01 XML data for domain: 1fnoA01

Molscript image for 1fnoA01
1fnoA01
PDB coordinates for domain 1fnoA01

PDB 1fno, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.630 Aminopeptidase
3.40.630.10 Zn peptidases Gene3D
3.40.630.10.4
3.40.630.10.4.2
3.40.630.10.4.2.1
3.40.630.10.4.2.1.1
3.40.630.10.4.2.1.1.1

Segment boundaries for domain 1fnoA01

Chopping figure for domain 1fnoA01
DomainStart PDB ResidueStop PDB Residue
1fnoA01 2 209
1fnoA01 320 406
1fnoA02 210 319

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 3.40.630.10.4.2.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qyvA01 82.51 Arginine and proline metabolismGlutathione metabolismHistidine metabolismMetabolic pathwaysXaa-His dipeptidase. Metallo peptidase. MEROPS family M20C 3.40.630.10 250 18 81 2.73 3.35
1cg2A01 81.75 Pseudomonas sp. RS-16Carboxypeptidase G2 3.40.630.10 279 18 84 2.74 3.26
2pokA01 80.76 Metabolic pathwaysLysine biosynthesisSuccinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Peptidase, M20/M25/M40 familyStreptococcus pneumoniae 3.40.630.10 288 14 83 2.96 3.56
1lfwA01 80.55 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.40.630.10 274 14 83 3.03 3.63
2greA01 79.94 Aminopeptidase [EC:3.4.11.-]Deblocking aminopeptidaseBacillus cereus ATCC 14579 3.40.630.10 233 14 73 2.76 3.77
1y0yA01 79.52 Endoglucanase [EC:3.2.1.4]Starch and sucrose metabolismPyrococcus horikoshiiTetrahedral aminopeptidase 3.40.630.10 254 16 76 2.72 3.56
3ct9B01 79.50 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.40.630.10 233 15 75 3.03 4.01
1vheA01 79.46 Bacillus subtilisPutative aminopeptidase ysdC 3.40.630.10 268 14 77 3.07 3.95
1yloA01 79.12 Shigella flexneriPutative uncharacterized protein 3.40.630.10 254 15 73 2.68 3.65
1vgyA01 79.08 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.40.630.10 256 14 79 2.92 3.69
2cf4A01 78.36 Pyrococcus horikoshiiPutative uncharacterized protein PH0519 3.40.630.10 236 19 72 2.92 4.01
2rb7A01 78.15 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.40.630.10 231 14 74 3.54 4.77
1vhoA01 77.79 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 3.40.630.10 237 15 72 2.90 4.00
3kasA01 76.72 Integral to plasma membraneHematopoietic cell lineageExtracellular regionCoated pitEndocytosis 3.40.630.10 308 6 74 3.27 4.42
Displaying entries 1 to 14 (page 1 of 1)


Domain ATOM Sequence

>pdb|1fnoA01
DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEGLVNITLSEKGTLATLPANVEGDIPAIGFISHVDTSP
DFSGKNVNPQIVENYRGGDIALGIGDEVLSPVFPVLHQLLGQTLITTDGKTLLGADDKAGVAEITALAVLKGNPIPHGDI
KVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNYNREKVVEHPHILDIAQQARDCHITPEKPIRGGTDG
AQLSFGLPCPNLFTGGYNYHGKHEFVTLEGEKAVQVIVRIAELTAK    

Domain COMBS Sequence

>pdb|1fnoA01
XDKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEXGLVNITLSEKGTLXATLPANVEGDIPAIGFISHVD
TSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVXFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIXTALAVLKGNPI
PHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNYNXREKVVEHPHILDIAQQAXRDCHITPEXK
PIRGGTDGAQLSFXGLPCPNLFTGGYNYHGKHEFVTLEGXEKAVQVIVRIAELTAK    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 16:33

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"