CATH Domain: 1fnnA01 XML data for domain: 1fnnA01

Molscript image for 1fnnA01
1fnnA01
PDB coordinates for domain 1fnnA01

PDB 1fnn, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.12
1.10.8.60.12.1
1.10.8.60.12.1.1
1.10.8.60.12.1.1.1
1.10.8.60.12.1.1.1.1

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Segment boundaries for domain 1fnnA01

Chopping figure for domain 1fnnA01
DomainStart PDB ResidueStop PDB Residue
1fnnA01 1 17
1fnnA01 192 275
1fnnA02 18 191
1fnnA03 276 388

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.10.8.60.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2chgA02 82.99 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 21 65 1.84 2.82
1njgA02 82.91 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 15 65 2.44 3.73
1sxjD02 82.84 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 22 68 1.95 2.85
2z4sA02 82.16 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 11 70 2.01 2.86
1g8pA02 81.76 Porphyrin and chlorophyll metabolismMagnesium chelatase subunit I [EC:6.6.1.1]Rhodobacter capsulatusMagnesium-chelatase 38 kDa subunitMetabolic pathways 1.10.8.80 78 10 63 2.41 3.80
1sxjC02 81.39 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 10 68 2.71 3.97
1jqjD03 80.64 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 86 10 68 2.94 4.30
1sxjE02 80.42 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 21 63 2.13 3.36
1jr3D03 79.64 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 14 68 2.51 3.67
1ny5B03 79.21 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 1.10.8.60 74 12 68 2.80 4.10
1r7rA06 76.82 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 58 12 57 2.83 4.93
2i5uA00 74.15 Enterococcus faecalisDnaD domain protein 1.10.10.630 75 5 66 3.31 4.99
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fnnA01
AIVVDDSVFSPSYVPKRYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ
QNGRKHIAPEDVRKSSKEVLF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fnnA01
MAIVVDDSVFSPSYVPKRYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA
QQNGRKHIAPEDVRKSSKEVLF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:33

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"