CATH Domain: 1fjlB00 XML data for domain: 1fjlB00

Molscript image for 1fjlB00
1fjlB00
PDB coordinates for domain 1fjlB00

PDB 1fjl, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.4
1.10.10.60.4.1
1.10.10.60.4.1.1
1.10.10.60.4.1.1.1
1.10.10.60.4.1.1.1.2

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Segment boundaries for domain 1fjlB00

Chopping figure for domain 1fjlB00
DomainStart PDB ResidueStop PDB Residue
1fjlB00 1 58

Structural Neighbourhood (31 entries)

There are 31 matching structural neighberhood comparisons for CATH ID 1.10.10.60.4.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 31 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jggA00 95.00 Trunk segmentationMotor axon guidanceMuscle organ developmentHomeobox even-skipped homolog proteinSegmentation protein even-skipped 1.10.10.60 57 43 94 0.89 0.94
1au7A02 94.47 Positive regulation of transcription from RNA polymerase II promoterRattus norvegicusNucleusNegative regulation of transcription from RNA polymerase II promoterAdenohypophysis development 1.10.10.60 57 35 94 0.87 0.92
2hddB00 94.20 Trunk segmentationImaginal disc-derived female genitalia developmentDrosophila melanogasterImaginal disc-derived male genitalia developmentProtein binding 1.10.10.60 56 39 94 0.95 1.00
1o4xA02 93.61 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 26 88 0.93 1.06
1b8iA00 93.16 Protein domain specific bindingDrosophila melanogasterPositive regulation of muscle organ developmentMesodermal cell fate specificationTranscription repressor activity 1.10.10.60 62 38 95 3.92 4.12
2dmqA01 92.36 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 36 86 0.90 1.04
1mh3A03 92.24 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 31 84 1.08 1.27
1b72A00 91.84 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 37 86 3.31 3.81
1k61A00 91.56 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 60 25 91 1.48 1.61
1nk3P00 91.25 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 37 93 1.35 1.44
1e3oC02 91.17 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 29 81 1.06 1.30
1b8iB00 91.07 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 31 91 1.16 1.27
1pufB00 88.49 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 32 79 2.24 2.82
1lfbA00 87.67 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 30 70 1.05 1.50
1wjhA00 87.48 1.10.10.60 76 25 77 2.55 3.28
1le8B00 86.99 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 25 74 1.29 1.74
1mnmC00 86.24 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 25 76 2.29 2.99
1w0uA00 85.69 Protein homodimerization activityTelomeric repeat-binding factor 2Protein C-terminus bindingTelomeric loop formationProtection from non-homologous end joining at telomere 1.10.10.60 55 5 88 2.92 3.31
1ic8A02 85.40 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 30 71 1.28 1.79
1tc3C00 85.15 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 9 86 3.70 4.28
1fexA00 84.78 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 6 86 2.51 2.90
1gv2A02 84.32 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 15 76 2.34 3.07
1w0tA00 84.00 Protein homooligomerizationPositive regulation of mitotic cell cycleTelomere maintenance via telomere shorteningNegative regulation of telomerase activityG2/M transition of mitotic cell cycle 1.10.10.60 52 7 88 3.02 3.43
1wh5A00 82.82 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 22 73 3.21 4.35
1iv6A00 82.70 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 8 94 3.50 3.69
1bobA03 82.55 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 7 89 2.88 3.21
1gdtB03 82.06 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 4 76 3.61 4.73
2k9nA02 80.46 MYB24Trichomonas vaginalis 1.10.10.60 54 5 83 3.24 3.90
1hcrA00 80.29 Salmonella enterica subsp. enterica serovar TyphimuriumDNA-invertase hin 1.10.10.60 52 11 77 3.73 4.78
3dewA01 78.71 TetR/AcrR family transcriptional regulatorTranscriptional regulator, TetR familyGeobacter sulfurreducens 1.10.10.60 50 10 74 2.95 3.96
1mw7A01 76.56 Helicobacter pyloriUPF0082 protein HP_0162 1.10.10.200 58 5 88 4.37 4.96
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Displaying entries 1 to 31 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fjlB00
QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fjlB00
QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTSVS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"