CATH Domain: 1fexA00 XML data for domain: 1fexA00

Molscript image for 1fexA00
1fexA00
PDB coordinates for domain 1fexA00

PDB 1fex, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.64
1.10.10.60.64.1
1.10.10.60.64.1.1
1.10.10.60.64.1.1.1
1.10.10.60.64.1.1.1.1

[top]
Segment boundaries for domain 1fexA00

Chopping figure for domain 1fexA00
DomainStart PDB ResidueStop PDB Residue
1fexA00 1 59

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.10.10.60.64.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1iv6A00 84.35 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 15 84 2.59 3.06
1o4xA02 83.23 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 9 81 2.30 2.83
1irzA00 82.59 Regulation of anthocyanin metabolic processCytokinin mediated signaling pathwayNucleusSequence-specific DNA binding transcription factor activityArabidopsis thaliana 1.10.10.60 64 10 82 3.92 4.73
2k9nA02 81.55 MYB24Trichomonas vaginalis 1.10.10.60 54 12 77 2.41 3.09
1nk3P00 81.50 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 15 80 2.85 3.52
2dmqA01 81.12 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 10 81 2.73 3.36
1wh5A00 77.61 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 13 67 2.76 4.09
1wjhA00 76.23 1.10.10.60 76 5 64 3.13 4.85
1iufA02 75.87 Centromeric DNA bindingHistone modificationARS-binding protein 1Schizosaccharomyces pombeCondensed nuclear chromosome, centromeric region 1.10.10.60 64 8 82 3.65 4.41
3bzcA01 68.98 Pseudomonas aeruginosaPutative uncharacterized protein 1.10.10.650 114 10 42 1.81 4.30
[1]
Displaying entries 1 to 10 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1fexA00
GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1fexA00
GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"