CATH Domain: 1fdrA02 XML data for domain: 1fdrA02

Molscript image for 1fdrA02
1fdrA02
PDB coordinates for domain 1fdrA02

PDB 1fdr, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module Gene3D
3.40.50.80.3
3.40.50.80.3.1
3.40.50.80.3.1.1
3.40.50.80.3.1.1.1
3.40.50.80.3.1.1.1.1

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Segment boundaries for domain 1fdrA02

Chopping figure for domain 1fdrA02
DomainStart PDB ResidueStop PDB Residue
1fdrA01 2 96
1fdrA02 97 248

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 3.40.50.80.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1krhA03 85.77 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 3.40.50.80 134 23 87 2.59 2.96
1umkA02 84.39 Amino sugar and nucleotide sugar metabolismHemoglobin complexNADH-cytochrome b5 reductase 3Cytochrome-b5 reductase [EC:1.6.2.2]Homo sapiens 3.40.50.80 154 19 87 2.81 3.21
1qfjA02 84.23 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 3.40.50.80 135 14 86 2.78 3.20
2rc5A02 83.67 Leptospira interrogansFerredoxin--NADP reductase 3.40.50.80 161 19 91 4.09 4.48
1f20A01 83.01 Response to heatNegative regulation of insulin secretionSynapseAmino acid bindingNuclear membrane 3.40.50.80 163 16 85 3.31 3.85
1ep3B02 82.32 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 3.40.50.80 117 11 76 2.74 3.56
1ja1A04 82.26 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 3.40.50.80 158 16 86 3.57 4.15
1cqxA03 82.15 Nitric oxide dioxygenase [EC:1.14.12.17]Ralstonia eutropha H16Flavohemoprotein 3.40.50.80 142 16 85 2.84 3.32
2r6hA02 81.35 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 13 70 2.56 3.64
2piaA02 80.98 Burkholderia cepaciaPhthalate dioxygenase reductase 3.40.50.80 121 17 79 3.87 4.86
2aefA01 76.12 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 6 63 2.83 4.43
1lssA00 75.84 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 4 65 2.89 4.44
2b0cA01 73.07 Phosphatase yihXGlucose-1-phosphatase activityPutative hydrolase of the HAD superfamilyEscherichia coli K-12 3.40.50.1000 133 5 75 3.69 4.92
1m6yA01 72.69 Thermotoga maritimaS-adenosyl-methyltransferase [EC:2.1.1.-]S-adenosyl-L-methionine-dependent methyltransferase mraW 3.40.50.150 180 7 63 3.16 4.95
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fdrA02
FFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRET
AAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAEHYW
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fdrA02
FFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRET
AAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAEHYW
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1fdr002" to "1fdrA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:32

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"