CATH Domain: 1f9vA00 XML data for domain: 1f9vA00

Molscript image for 1f9vA00
1f9vA00
PDB coordinates for domain 1f9vA00

PDB 1f9v, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.850 Kinesin
3.40.850.10 Kinesin Gene3D
3.40.850.10.1
3.40.850.10.1.1
3.40.850.10.1.1.1
3.40.850.10.1.1.1.1
3.40.850.10.1.1.1.1.1

[top]
Segment boundaries for domain 1f9vA00

Chopping figure for domain 1f9vA00
DomainStart PDB ResidueStop PDB Residue
1f9vA00 385 726

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.40.850.10.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2zfiA00 87.56 Mus musculusKinesin-like protein KIF1A 3.40.850.10 329 31 88 2.29 2.59
2nr8A00 87.23 3.40.850.10 304 30 86 2.27 2.63
1ry6A00 86.81 Plasmodium falciparum 3D7Kinesin-like protein, putative 3.40.850.10 319 30 89 2.65 2.96
3bfnA01 86.77 KinetochoreNucleusMitosisProtein bindingKinesin family member 22 3.40.850.10 272 31 82 2.40 2.90
3dc4A00 85.21 Distributive segregationDrosophila melanogasterMitotic spindle organizationEstablishment of meiotic spindle orientationKinesin-like protein Nod 3.40.850.10 291 29 85 2.61 3.06
2kinA00 82.08 Rattus norvegicusKinesin heavy chain isoform 5CProtein binding 3.40.850.10 238 29 66 1.93 2.89
[1]
Displaying entries 1 to 6 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1f9vA00
GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLD
GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRKHEIRHDQETKT
TTITNVTSCKLESEEMVEIILKKANEHSSASHSIFIIHLSGSNAGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIN
KSLSCLGDVIHALGQPDRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1f9vA00
MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSS
LDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS
IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL
NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISP
SSSHINETLNSLRFASKVNSTRLVSRK
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:51

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"