CATH Domain: 1f20A03 XML data for domain: 1f20A03

Molscript image for 1f20A03
1f20A03
PDB coordinates for domain 1f20A03

PDB 1f20, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.5
2.40.30.10.5.1
2.40.30.10.5.1.1
2.40.30.10.5.1.1.1
2.40.30.10.5.1.1.1.1

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Segment boundaries for domain 1f20A03

Chopping figure for domain 1f20A03
DomainStart PDB ResidueStop PDB Residue
1f20A01 1235 1397
1f20A02 963 987
1f20A02 1038 1171
1f20A03 988 1037
1f20A03 1172 1234

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 2.40.30.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ddgA01 91.33 Sulfur metabolismMetabolic pathwaysSulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]Sulfite reductase [NADPH] flavoprotein alpha-componentProtein binding 2.40.30.10 114 31 93 1.50 1.60
1ja1A02 89.77 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 2.40.30.10 122 30 88 1.83 2.07
2bmwA01 86.89 Nostoc sp. PCC 7119Flavin adenine dinucleotide bindingFerredoxin--NADP reductaseProtein bindingFerredoxin-NADP+ reductase activity 2.40.30.10 128 21 83 2.29 2.74
2piaA01 85.45 Burkholderia cepaciaPhthalate dioxygenase reductase 2.40.30.10 104 14 83 2.38 2.86
2rc5B01 84.58 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 20 76 2.43 3.18
1krhA02 84.34 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 2.40.30.10 97 22 79 2.41 3.03
1qfjA01 83.48 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 13 76 2.08 2.73
2qdxA01 83.10 Pseudomonas aeruginosaFerredoxin--NADP+ reductase [EC:1.18.1.2]Ferredoxin--NADP+ reductase 2.40.30.10 95 16 77 1.80 2.31
1ep3B01 83.09 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 14 81 2.87 3.53
2gpjA01 82.98 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 12 78 1.94 2.46
2r6hA01 81.59 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 14 71 2.53 3.53
1kzlA02 80.99 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 6 77 3.13 4.02
1i8dA01 80.82 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 8 76 2.73 3.55
1i8dC02 79.02 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 6 69 3.21 4.65
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1f20A03
HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPPRYYSISSSPDMYPDEVHLTVAIVSYHTRD
GEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1f20A03
HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPPRYYSISSSPDMYPDEVHLTVAIVSYHTRD
GEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:30

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"