CATH Domain: 1f20A01 XML data for domain: 1f20A01

Molscript image for 1f20A01
1f20A01
PDB coordinates for domain 1f20A01

PDB 1f20, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module Gene3D
3.40.50.80.7
3.40.50.80.7.1
3.40.50.80.7.1.1
3.40.50.80.7.1.1.1
3.40.50.80.7.1.1.1.1

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Segment boundaries for domain 1f20A01

Chopping figure for domain 1f20A01
DomainStart PDB ResidueStop PDB Residue
1f20A01 1235 1397
1f20A02 963 987
1f20A02 1038 1171
1f20A03 988 1037
1f20A03 1172 1234

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.50.80.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2rc5A02 87.55 Leptospira interrogansFerredoxin--NADP reductase 3.40.50.80 161 22 91 2.31 2.53
1qfjA02 81.62 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 3.40.50.80 135 16 80 3.02 3.76
1cqxA03 81.45 Nitric oxide dioxygenase [EC:1.14.12.17]Ralstonia eutropha H16Flavohemoprotein 3.40.50.80 142 18 79 2.85 3.60
1ep3B02 80.72 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 3.40.50.80 117 17 71 2.97 4.14
2piaA02 80.58 Burkholderia cepaciaPhthalate dioxygenase reductase 3.40.50.80 121 16 72 2.99 4.13
2r6hA02 79.77 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 15 66 2.61 3.90
2aefA01 76.13 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 8 59 2.74 4.60
1lssA00 74.13 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 6 60 3.00 4.94
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1f20A01
HLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSR
EPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDI
FGV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1f20A01
HLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSR
EPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDI
FGV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:30

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"