CATH Domain: 1f1eA00 XML data for domain: 1f1eA00

Molscript image for 1f1eA00
1f1eA00
PDB coordinates for domain 1f1eA00

PDB 1f1e, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.16
1.10.20.10.16.1
1.10.20.10.16.1.1
1.10.20.10.16.1.1.1
1.10.20.10.16.1.1.1.1

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Segment boundaries for domain 1f1eA00

Chopping figure for domain 1f1eA00
DomainStart PDB ResidueStop PDB Residue
1f1eA00 4 154

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.10.20.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1q9cA01 81.50 Jak-STAT signaling pathwayPathways in cancerChemokine signaling pathwayNeurotrophin signaling pathwayNon-small cell lung cancer 1.10.20.10 145 8 88 3.29 3.72
1h3oB00 73.41 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 11 47 2.07 4.35
1jfiA00 72.66 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 15 42 1.72 4.08
1bh9A00 68.60 Basal transcription factorsTranscription factor TFIID complexTranscription initiation factor TFIID subunit D11Protein C-terminus bindingTranscription initiation factor TFIID subunit 13 1.10.20.10 45 17 29 1.31 4.38
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1f1eA00
ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTAEYVANAAKSVLDASGKKTLEEHLKALADVLVEGVEDYDGELFGRA
TVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSPKGGEL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1f1eA00
MAVELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLXEEHLKALADVLXVEGVEDYDG
ELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSXPKGGEL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"