CATH Domain: 1f0kA02 XML data for domain: 1f0kA02

Molscript image for 1f0kA02
1f0kA02
PDB coordinates for domain 1f0kA02

PDB 1f0k, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.2000 Glycogen Phosphorylase B; Gene3D
3.40.50.2000.11
3.40.50.2000.11.1
3.40.50.2000.11.1.1
3.40.50.2000.11.1.1.1
3.40.50.2000.11.1.1.1.1

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Segment boundaries for domain 1f0kA02

Chopping figure for domain 1f0kA02
DomainStart PDB ResidueStop PDB Residue
1f0kA01 7 162
1f0kA01 339 357
1f0kA02 163 338

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.40.50.2000.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1f0kA01 75.49 Peptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferaseUndecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity 3.40.50.2000 175 12 73 3.40 4.64
1kjnA00 74.71 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.10160 148 12 73 3.53 4.78
2zayA00 74.63 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 7 61 3.04 4.91
2b4aA00 74.29 BH3024 proteinBacillus halodurans 3.40.50.2300 116 8 61 3.05 4.97
3b2nA00 73.81 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 7 61 2.95 4.76
3cnbA00 72.92 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 9 63 3.07 4.87
2qr3A00 72.49 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 14 62 2.87 4.59
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1f0kA02
VRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVT
EFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW
SRETLLTMAERARAAS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1f0kA02
VRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVT
EFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW
SRETLLTMAERARAAS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:30

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"