Set cath from cathlist by auto on 05 Mar 2006 18:54
This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"
| CATH Code | Level Description | Links |
|---|---|---|
3
| Alpha Beta | |
3.20
| Alpha-Beta Barrel | |
3.20.20
| TIM Barrel | |
3.20.20.30
| FMN dependent fluorescent proteins | Gene3D |
3.20.20.30.5
| ||
3.20.20.30.5.1
| ||
3.20.20.30.5.1.1
| ||
3.20.20.30.5.1.1.1
| ||
3.20.20.30.5.1.1.1.1
|
There are 2 matching structural neighberhood comparisons for CATH ID 3.20.20.30.5.1.1.1.1 (SIMAX score < 5)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
![]() |
1m41A00 | 80.57 | 3.20.20.30 | 328 | 17 | 82 | 3.04 | 3.68 | |
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2b81C00 | 78.94 | 3.20.20.30 | 310 | 17 | 78 | 3.17 | 4.06 |
>pdb|1ezwA00 AEVSFGIELLPDDKPTKIAHLIKVAEDNGFEYAWICDHYNNYSYMGVLTLAAVITSKIKLGPGITNPYTRHPLITASNIA TLDWISGGRAIIGMGPGDKATFDKMGLPFPCKIPIWNPEAEDEVGPATAIREVKEVIYQYLEGGPVEYEGKYVKTGTADV KARSIQGSDIPFYMGAQGPIMLKTAGEIANGVLVNASNPKDFEVAVPKIEEGAKEAGRSLDEIDVAAYTCFSIDKDEDKA IEATKIVVAFIVMGSPDVVLERHGIDTEKAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIAGDPDTVVDKIEELLKAGVTQ VVVGSPIGPDKEKAIELVGQEVIPHFK
>pdb|1ezwA00 MAEVSFGIELLPDDKPTKIAHLIKVAEDNGFEYAWICDHYNNYSYMGVLTLAAVITSKIKLGPGITNPYTRHPLITASNI ATLDWISGGRAIIGMGPGDKATFDKMGLPFPCKIPIWNPEAEDEVGPATAIREVKEVIYQYLEGGPVEYEGKYVKTGTAD VKARSIQGSDIPFYMGAQGPIMLKTAGEIANGVLVNASNPKDFEVAVPKIEEGAKEAGRSLDEIDVAAYTCFSIDKDEDK AIEATKIVVAFIVMGSPDVVLERHGIDTEKAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIAGDPDTVVDKIEELLKAGVT QVVVGSPIGPDKEKAIELVGQEVIPHFKE
This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"
This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"
PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"