CATH Domain: 1ezjA02 XML data for domain: 1ezjA02

Molscript image for 1ezjA02
1ezjA02
PDB coordinates for domain 1ezjA02

PDB 1ezj, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.340 Gene3D
1.10.287.340.1
1.10.287.340.1.1
1.10.287.340.1.1.1
1.10.287.340.1.1.1.1
1.10.287.340.1.1.1.1.1

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Segment boundaries for domain 1ezjA02

Chopping figure for domain 1ezjA02
DomainStart PDB ResidueStop PDB Residue
1ezjA01 2 63
1ezjA02 64 115

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 1.10.287.340.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gk6B00 89.53 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 13 84 2.41 2.85
1ik7A00 87.15 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 1 88 2.65 3.00
1a02F00 86.87 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 9 86 2.29 2.64
1wt6B00 86.72 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 9 77 2.44 3.14
1gl2A00 86.36 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 11 88 3.11 3.51
2e42A00 86.20 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 17 75 1.23 1.63
1svfC00 85.64 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 3 77 2.23 2.88
2w83C00 85.60 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 11 77 2.84 3.66
1jnmA00 85.11 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 56 3 87 3.00 3.43
3b5nJ00 84.55 Cellular membrane fusionSNARE complexPhosphatidylinositol-3,5-bisphosphate bindingSyntaxin 1B/2/3Prospore membrane 1.20.5.110 64 7 73 3.04 4.14
3efgA00 84.53 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 6 94 3.24 3.44
3ii6A02 84.45 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 7 70 1.45 2.05
3b5nA00 84.26 Synaptobrevin homolog 1Vesicle fusionSNAP receptor activityPlasma membraneVesicle-associated membrane protein 4 1.20.5.110 61 5 62 1.01 1.62
1gd2F00 84.17 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 13 73 3.40 4.63
1l2pA00 84.12 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 1 65 2.18 3.32
1debB00 83.66 Beta-catenin destruction complexAdenomatous polyposis coli proteinPathways in cancerNegative regulation of microtubule depolymerizationPositive regulation of pseudopodium assembly 1.20.5.10 53 1 79 3.21 4.05
1dh3A00 83.18 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 11 85 2.61 3.05
1nknA00 82.19 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 5 68 2.58 3.74
1gk4C00 82.11 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 9 71 2.76 3.86
3e7kA00 81.96 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 5 66 2.47 3.71
1jocA01 81.65 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 3 70 2.53 3.61
1uixA00 80.71 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 3 70 3.29 4.66
1pl5A00 79.55 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 7 46 0.62 1.33
1urqC00 78.74 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 68 3 51 1.90 3.69
2zvoB00 78.37 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 13 59 2.63 4.45
1d7mA00 77.79 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 15 51 2.43 4.72
2wpqA00 75.72 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 5 52 2.52 4.80
3fx7A00 75.58 Helicobacter pyloriPutative uncharacterized protein 1.10.287.850 83 3 43 1.60 3.69
1tvkB03 74.61 Gap junctionPathogenic Escherichia coli infectionTubulin betaBos taurusTubulin beta-2B chain 1.10.287.600 54 3 51 2.33 4.49
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ezjA02
SARKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLSTLHIITD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ezjA02
SARKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLSTLHIITD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:29

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"