CATH Domain: 1eq9A01 XML data for domain: 1eq9A01

Molscript image for 1eq9A01
1eq9A01
PDB coordinates for domain 1eq9A01

PDB 1eq9, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.39
2.40.10.10.39.1
2.40.10.10.39.1.1
2.40.10.10.39.1.1.1
2.40.10.10.39.1.1.1.1

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Segment boundaries for domain 1eq9A01

Chopping figure for domain 1eq9A01
DomainStart PDB ResidueStop PDB Residue
1eq9A01 16 27
1eq9A01 121 232
1eq9A02 28 120
1eq9A02 233 244

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 2.40.10.10.39.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1k2i101 91.45 Bos taurusChymotrypsinogen A 2.40.10.10 118 35 94 1.40 1.49
2o8tA01 90.63 Regulation of smooth muscle cell migrationCell surfaceUrokinase-type plasminogen activatorSignal transductionProteolysis 2.40.10.10 128 34 89 1.16 1.29
2hlcA02 89.38 CollagenaseHypoderma lineatum 2.40.10.10 126 32 90 2.09 2.31
2asuB01 88.41 Hepatocyte growth factor-like proteinHomo sapiens 2.40.10.10 122 32 91 2.26 2.46
3gylB01 88.19 ProstasinPlasma membraneProtease, serine, 8 (prostasin) [EC:3.4.21.-]Homo sapiensExtracellular space 2.40.10.10 133 35 87 1.64 1.86
1q3xA02 88.13 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 137 30 84 1.69 2.00
1si5H01 88.05 Pathways in cancerHepatocyte growth factorEpithelial to mesenchymal transitionRenal cell carcinomaCytokine-cytokine receptor interaction 2.40.10.10 119 30 93 2.17 2.33
1elvA02 87.87 Serine-type endopeptidase activitySystemic lupus erythematosusComplement C1s subcomponentHomo sapiensComplement component 1, s subcomponent [EC:3.4.21.42] 2.40.10.10 126 28 90 2.36 2.61
1yphE00 84.33 Bos taurusChymotrypsinogen A 2.40.10.10 97 31 66 1.54 2.31
1y8tB02 81.60 Two-component systemPutative serine protease PepD [EC:3.4.21.-]PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B)Mycobacterium tuberculosis 2.40.10.10 111 17 77 3.40 4.37
2qf3B02 81.19 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 103 12 76 2.79 3.63
1lcyA02 79.92 Serine-type endopeptidase activityHtrA serine peptidase 2 [EC:3.4.21.108]Endoplasmic reticulum membraneParkinson's diseaseNucleus 2.40.10.10 84 17 70 3.36 4.74
2j92A02 79.56 Foot-and-mouth disease virus (strain A10-61)Genome polyprotein 2.40.10.10 109 9 70 3.13 4.41
1dleB02 78.74 Complement factor BComplement bindingHomo sapiensComponent factor B [EC:3.4.21.47]Complement and coagulation cascades 2.40.10.10 142 21 66 2.36 3.57
2hrvA02 77.99 Genome polyproteinHuman rhinovirus 2 2.40.10.10 95 13 69 3.38 4.88
2o8mA02 77.47 Genome polyproteinHepatitis C virus subtype 1a 2.40.10.10 87 11 64 3.01 4.70
1svpA02 74.22 Sindbis virusStructural polyprotein 2.40.10.10 86 11 58 2.69 4.56
3fanA02 72.44 Porcine reproductive and respiratory syndrome virusNon-structural protein 2.40.10.10 69 15 52 2.44 4.60
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Displaying entries 1 to 18 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1eq9A01
IVGGKDAPVGKYIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEGA
CHGDSGGPLVANGAQIGIVSFGSPCALGEPDVYTRVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1eq9A01
IVGGKDAPVGKYIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEGA
CHGDSGGPLVANGAQIGIVSFGSPCALGEPDVYTRVS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:28

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"