CATH Domain: 1ep3B02 XML data for domain: 1ep3B02

Molscript image for 1ep3B02
1ep3B02
PDB coordinates for domain 1ep3B02

PDB 1ep3, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module Gene3D
3.40.50.80.13
3.40.50.80.13.1
3.40.50.80.13.1.1
3.40.50.80.13.1.1.1
3.40.50.80.13.1.1.1.1

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Segment boundaries for domain 1ep3B02

Chopping figure for domain 1ep3B02
DomainStart PDB ResidueStop PDB Residue
1ep3B01 2 100
1ep3B02 104 220
1ep3B03 221 262

Structural Neighbourhood (70 entries)

There are 70 matching structural neighberhood comparisons for CATH ID 3.40.50.80.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 70 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2r6hA02 85.54 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 25 82 2.24 2.73
2aefA01 82.55 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 6 76 2.18 2.87
1pjqA01 82.49 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.40.50.720 112 10 80 2.52 3.14
1lssA00 80.14 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 10 68 2.19 3.18
1mioB04 80.05 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 11 75 2.69 3.58
1xeaA01 79.19 Vibrio choleraeOxidoreductase, Gfo/Idh/MocA familyVirulence factor 3.40.50.720 117 9 73 2.74 3.73
2x5oA01 78.95 D-Glutamine and D-glutamate metabolismPeptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylmuramoylalanine--D-glutamate ligaseUDP-N-acetylmuramoylalanine-D-glutamate ligase activity 3.40.50.720 92 10 77 2.86 3.68
1a9xA08 78.91 3.40.50.1380 106 13 84 4.18 4.94
1m1nB03 78.72 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 14 75 3.12 4.15
2pfsA01 78.62 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 8 87 3.75 4.30
3fdxA00 78.08 Putative uncharacterized protein ynaFKlebsiella pneumoniae subsp. pneumoniae MGH 78578 3.40.50.620 121 8 83 4.07 4.88
2ho3A01 77.79 Oxidoreductase, Gfo/Idh/MocA familyStreptococcus pneumoniae 3.40.50.720 113 12 76 3.39 4.46
1wo8A00 77.74 Methylglyoxal synthase [EC:4.2.3.3]Thermus thermophilus HB8Methylglyoxal synthasePyruvate metabolism 3.40.50.1380 126 6 73 3.19 4.32
2hmtA00 77.68 Trk system potassium uptake protein TrkABacillus subtilisKtr system potassium uptake protein A 3.40.50.720 139 6 66 2.49 3.76
3fpcA02 77.61 Entamoeba histolyticaNADP-dependent alcohol dehydrogenase 3.40.50.720 130 9 73 3.01 4.12
1dljA02 77.61 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismPentose and glucuronate interconversionsAscorbate and aldarate metabolismMetabolic pathways 3.40.50.1870 108 5 74 3.41 4.59
3hhpA01 77.59 Citrate cycle (TCA cycle)Pyruvate metabolismGlyoxylate and dicarboxylate metabolismMetabolic pathwaysMalate dehydrogenase [EC:1.1.1.37] 3.40.50.720 138 7 64 2.88 4.47
1lluA02 77.54 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 5 71 2.97 4.14
1f8fA02 77.43 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.40.50.720 137 9 72 2.80 3.87
1pl8A02 77.39 Membrane fractionZinc ion bindingL-iditol 2-dehydrogenase [EC:1.1.1.14]Sorbitol catabolic processGlucose metabolic process 3.40.50.720 139 10 71 3.01 4.23
2pjuC01 77.19 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 3.40.50.2300 100 4 64 2.85 4.45
1mjhB00 77.13 Methanocaldococcus jannaschiiUncharacterized protein MJ0577 3.40.50.620 144 16 71 3.45 4.82
1j6uA01 77.07 D-Glutamine and D-glutamate metabolismThermotoga maritimaUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Peptidoglycan biosynthesis 3.40.50.720 85 9 72 2.98 4.10
1ur5C01 77.05 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismChloroflexus aurantiacus J-10-flMetabolic pathways 3.40.50.720 136 11 64 2.96 4.57
2jhfA02 77.02 Tyrosine metabolismDrug metabolism - cytochrome P450Fatty acid metabolismMetabolism of xenobiotics by cytochrome P450Equus caballus 3.40.50.720 139 6 70 3.16 4.48
1v71A02 76.80 Serine racemaseSchizosaccharomyces pombe 3.40.50.1100 97 7 70 2.85 4.02
3eagA01 76.78 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 12 75 3.18 4.23
3eq2B01 76.76 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 9 62 2.39 3.83
1h2bA02 76.73 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysAeropyrum pernix 3.40.50.720 140 9 70 2.99 4.27
2eggA02 76.67 Shikimate 5-dehydrogenase [EC:1.1.1.25]Geobacillus kaustophilusPhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenaseMetabolic pathways 3.40.50.720 140 8 69 3.39 4.89
1p3dA01 76.67 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 14 71 3.09 4.30
1nytA02 76.61 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysShikimate 5-dehydrogenase [EC:1.1.1.25]Shikimate dehydrogenaseProtein binding 3.40.50.720 143 11 65 3.27 4.97
2kyrA00 76.41 PTS system, fructose-specific IIB-like component [EC:2.7.1.69]Escherichia coli K-12Fructose-like phosphotransferase enzyme IIB component 1 3.40.50.2300 108 9 67 3.27 4.84
1ydwA01 76.36 Arabidopsis thalianaUncharacterized oxidoreductase At4g09670 3.40.50.720 124 8 75 3.74 4.99
1ve1A02 76.29 Thermus thermophilus HB8Cysteine synthase A [EC:2.5.1.47]Selenoamino acid metabolismCysteine synthaseSulfur metabolism 3.40.50.1100 108 5 71 3.43 4.78
1t2dA01 76.27 L-lactate dehydrogenaseCysteine and methionine metabolismGlycolysis / GluconeogenesisPyruvate metabolismPlasmodium falciparum CDC/Honduras 3.40.50.720 148 5 60 2.93 4.82
1q77A00 76.25 Uncharacterized protein aq_178Aquifex aeolicus 3.40.50.620 137 11 74 3.54 4.75
3d4oA02 76.16 Dipicolinate synthase subunit ABacillus haloduransDipicolinate synthase subunit A 3.40.50.720 139 5 64 2.81 4.39
3d4oB01 76.03 Dipicolinate synthase subunit ABacillus haloduransDipicolinate synthase subunit A 3.40.50.720 139 11 60 3.02 5.00
1wlyA02 75.86 2-haloacrylate reductaseBurkholderia sp. WS 3.40.50.720 147 9 65 2.98 4.56
2c82A01 75.85 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Mycobacterium tuberculosis 3.40.50.720 141 11 74 3.18 4.27
1hyeA01 75.82 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.40.50.720 147 13 61 3.06 4.94
2driA01 75.76 Bacterial chemotaxisABC transportersD-ribose-binding periplasmic proteinRibose transport system substrate-binding proteinMembrane 3.40.50.2300 125 7 65 3.19 4.86
2p2sA01 75.73 Pectobacterium atrosepticumPutative oxidoreductase 3.40.50.720 130 10 66 3.04 4.54
1tezA01 75.73 Deoxyribodipyrimidine photo-lyaseSynechococcus elongatus PCC 6301Deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 3.40.50.620 128 10 80 3.92 4.87
1kjnA00 75.34 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.10160 148 12 63 3.14 4.94
3a06B01 75.21 Terpenoid backbone biosynthesisThermotoga maritima1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Metabolic pathways 3.40.50.720 141 10 73 3.21 4.39
2fi1A01 75.20 Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 123 6 83 4.15 4.96
1kyqB01 75.18 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.40.50.720 147 11 63 2.71 4.24
3fg9C01 75.13 Putative uncharacterized protein lp_3663Lactobacillus plantarum 3.40.50.620 133 13 74 3.41 4.58
1f3lA01 75.13 Rattus norvegicusProtein arginine N-methyltransferase 3 [EC:2.1.1.-]Protein arginine N-methyltransferase 3Peptidyl-arginine methylation, to asymmetrical-dimethyl arginineProtein-arginine omega-N asymmetric methyltransferase activity 3.40.50.150 143 11 67 3.13 4.66
1hyhA01 75.12 Weissella confusaL-2-hydroxyisocaproate dehydrogenase 3.40.50.720 141 10 61 3.05 4.94
3i28A01 75.07 PeroxisomeSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase activityEpoxide hydrolase 2 3.40.50.1000 135 11 74 3.50 4.72
1vi2A02 74.98 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenase [EC:1.1.1.282]Shikimate 5-dehydrogenase activity 3.40.50.720 147 6 69 3.45 4.97
1nvmB01 74.85 Pseudomonas sp. CF600Acetaldehyde dehydrogenase (Acylating) 3.40.50.720 158 10 60 2.91 4.79
2rgyA01 74.81 LacI family transcriptional regulatorBurkholderia phymatum STM815Transcriptional regulator, LacI family 3.40.50.2300 122 3 64 2.98 4.60
1qamA01 74.74 Bacillus subtilisRRNA (adenine-N6-)-methyltransferase [EC:2.1.1.48]RRNA adenine N-6-methyltransferase 3.40.50.150 157 9 61 2.97 4.86
3cu5B00 74.69 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 7 56 2.71 4.79
2b0cA01 74.59 Phosphatase yihXGlucose-1-phosphatase activityPutative hydrolase of the HAD superfamilyEscherichia coli K-12 3.40.50.1000 133 5 75 3.70 4.92
1iz0A02 74.52 NADPH2:quinone reductase [EC:1.6.5.5]Probable quinone oxidoreductaseThermus thermophilus 3.40.50.720 152 8 59 2.99 4.99
1yl5A01 74.43 Metabolic pathwaysLysine biosynthesisDihydrodipicolinate reductase [EC:1.3.1.26]Dihydrodipicolinate reductaseMycobacterium tuberculosis 3.40.50.720 140 3 52 2.52 4.77
2jk1A00 74.34 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 6 51 2.35 4.57
1l3iA00 74.29 Methanothermobacter thermautotrophicus str. Delta HPorphyrin and chlorophyll metabolismProbable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]Precorrin-8W decarboxylase [EC:1.-.-.-]Metabolic pathways 3.40.50.150 178 13 53 2.50 4.68
1wcwA02 73.74 Thermus thermophilus HB8Uroporphyrinogen-III synthase [EC:4.2.1.75]Probable uroporphyrinogen-III synthasePorphyrin and chlorophyll metabolismMetabolic pathways 3.40.50.10090 119 12 83 4.13 4.96
1q0qA01 73.73 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 3.40.50.720 150 5 67 2.77 4.11
3gt7A00 73.57 Sensor proteinSyntrophus aciditrophicus SB 3.40.50.2300 131 9 56 2.74 4.85
1mdbA01 72.48 2,3-dihydroxybenzoate-AMP ligase [EC:2.7.7.58]Bacillus subtilis2,3-dihydroxybenzoate-AMP ligaseBiosynthesis of siderophore group nonribosomal peptides 3.40.50.980 158 7 51 2.40 4.68
1lciA01 72.08 Photinus pyralisLuciferin 4-monooxygenasePeroxisome 3.40.50.980 153 3 52 2.48 4.74
3c1aA01 71.88 Putative oxidoreductaseMagnetospirillum magnetotacticum MS-1 3.40.50.720 160 7 55 2.67 4.85
1n2zA01 71.47 ABC transportersPeriplasmic spaceVitamin B12-binding proteinCobalamin bindingVitamin B12 transport system substrate-binding protein 3.40.50.1980 119 5 70 3.28 4.65
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Displaying entries 1 to 70 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ep3B02
VAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGML
MNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ep3B02
VAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGML
MNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISM
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:28

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"