CATH Domain: 1ep3B01 XML data for domain: 1ep3B01

Molscript image for 1ep3B01
1ep3B01
PDB coordinates for domain 1ep3B01

PDB 1ep3, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.17
2.40.30.10.17.1
2.40.30.10.17.1.1
2.40.30.10.17.1.1.1
2.40.30.10.17.1.1.1.1

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Segment boundaries for domain 1ep3B01

Chopping figure for domain 1ep3B01
DomainStart PDB ResidueStop PDB Residue
1ep3B01 2 100
1ep3B02 104 220
1ep3B03 221 262

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 2.40.30.10.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2gpjA01 85.60 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 12 95 2.82 2.94
1qfjA01 84.73 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 13 86 2.56 2.95
1i8dA01 83.71 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 14 84 2.79 3.29
1kzlA02 83.60 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 10 84 2.57 3.05
2rc5B01 81.43 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 16 69 2.46 3.55
1i8dC02 81.34 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 11 74 2.68 3.59
2r6hA01 80.03 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 21 68 2.93 4.26
2ck3D01 78.48 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 10 73 3.12 4.23
2ck3A01 76.51 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 2.40.30.20 70 5 69 2.55 3.66
2wssA01 76.43 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]Huntington's diseaseParkinson's diseaseOxidative phosphorylationBos taurus 2.40.30.20 93 4 69 2.38 3.41
2d9rA00 75.94 Porphyromonas gingivalisPutative uncharacterized protein 2.40.30.100 82 6 77 3.49 4.49
2qf3A01 74.56 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 102 3 64 3.08 4.76
2ey4C00 73.25 Pyrococcus furiosusSmall nucleolar rnp gar1-like proteinRNA-binding protein 2.40.10.230 73 4 71 3.10 4.32
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ep3B01
SQLQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTY
KLSKLESGAKVDVMGPLGN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ep3B01
MSQLQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGT
YKLSKLESGAKVDVMGPLGN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:28

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"