CATH Domain: 1efuB01 XML data for domain: 1efuB01

Molscript image for 1efuB01
1efuB01
PDB coordinates for domain 1efuB01

PDB 1efu, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain Gene3D
1.10.8.10.9
1.10.8.10.9.1
1.10.8.10.9.1.1
1.10.8.10.9.1.1.1
1.10.8.10.9.1.1.1.1

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Segment boundaries for domain 1efuB01

Chopping figure for domain 1efuB01
DomainStart PDB ResidueStop PDB Residue
1efuB01 1 54
1efuB02 55 140
1efuB03 141 180
1efuB03 228 261
1efuB04 181 227

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 1.10.8.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1a5tA02 86.63 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.10 40 15 74 1.82 2.46
1dv0A00 85.15 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 45 11 83 2.39 2.87
1otrA00 84.52 Saccharomyces cerevisiaeProtein bindingUbiquitin-binding protein CUE2 1.10.8.10 49 20 88 3.25 3.66
1ifyA00 84.31 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 49 14 85 3.19 3.74
2h5xA03 82.28 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.8.10 50 8 75 2.38 3.13
1wivA00 82.14 Embryo development ending in seed dormancyUbiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15]Ubiquitin carboxyl-terminal hydrolase 14Arabidopsis thalianaUbiquitin-specific protease activity 1.10.8.10 73 24 65 3.24 4.93
1ixrB03 81.53 Homologous recombinationThermus thermophilus HB8Holliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAProtein binding 1.10.8.10 53 7 83 4.09 4.91
1bvsF03 81.24 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.8.10 45 13 70 2.08 2.96
3b7nA01 80.77 CRAL-TRIO domain-containing protein YKL091CNucleusSaccharomyces cerevisiae 1.10.8.20 79 9 63 2.66 4.20
1sxjD02 80.47 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 12 74 2.87 3.86
1in4A03 80.33 Holliday junction DNA helicase RuvBThermotoga maritimaHomologous recombinationHolliday junction ATP-dependent DNA helicase ruvB 1.10.8.60 75 11 69 3.20 4.62
1j09A04 80.26 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 1.10.8.70 48 6 72 2.88 3.99
1v92A00 79.29 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 1.10.8.10 46 13 83 3.39 4.07
1tteA02 79.12 Ubiquitin-conjugating enzyme E2-24 kDaIdentical protein bindingProtein polyubiquitinationUbiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:6.3.2.19]Ubiquitin mediated proteolysis 1.10.8.10 57 12 71 2.99 4.16
1nvmA02 76.36 Pseudomonas sp. CF6004-hydroxy-2-oxovalerate aldolase 1.10.8.60 64 9 75 3.05 4.07
1r6bX03 75.97 ATP-dependent Clp protease ATP-binding subunit clpAATP-dependent Clp protease ATP-binding subunit ClpAProtein bindingEscherichia coli K-12 1.10.8.60 88 12 57 2.80 4.83
3crmA02 71.03 Metabolic pathwaysPseudomonas aeruginosaTRNA dimethylallyltransferase [EC:2.5.1.75]TRNA dimethylallyltransferase 1.10.287.890 84 1 44 2.01 4.56
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1efuB01
AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1efuB01
AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGN
BLAST against CATH

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Domain History Events (4)

Classification merge by cuff on 19 Jan 2007 14:48

Nice SSAP scores and superpositions. Also decent evalues. SCOP suggests structures are in same family.

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"