CATH Domain: 1edqA02 XML data for domain: 1edqA02

Molscript image for 1edqA02
1edqA02
PDB coordinates for domain 1edqA02

PDB 1edq, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.80 Glycosidases Gene3D
3.20.20.80.11
3.20.20.80.11.1
3.20.20.80.11.1.1
3.20.20.80.11.1.1.1
3.20.20.80.11.1.1.1.1

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Segment boundaries for domain 1edqA02

Chopping figure for domain 1edqA02
DomainStart PDB ResidueStop PDB Residue
1edqA01 24 130
1edqA02 131 442
1edqA02 519 561
1edqA03 443 518

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.20.20.80.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w9pA01 86.87 Amino sugar and nucleotide sugar metabolismChitinaseChitinase [EC:3.2.1.14]Aspergillus fumigatus 3.20.20.80 332 29 83 2.23 2.67
1vf8A01 84.25 Mus musculusBeta-N-acetylhexosaminidase activityCytoplasmic membrane-bounded vesicleChitinase-3-like protein 3Sugar binding 3.20.20.80 302 23 78 1.86 2.38
1jndA01 82.30 Amino sugar and nucleotide sugar metabolismChitinase [EC:3.2.1.14]Imaginal disc developmentChitinase-like protein Idgf2Imaginal disc growth factor receptor binding 3.20.20.80 306 19 78 3.03 3.87
3fndA01 79.80 ChitinaseBacteroides thetaiotaomicron 3.20.20.80 261 18 69 2.70 3.86
1eokA00 75.49 Endo-beta-N-acetylglucosaminidase F3Elizabethkingia meningoseptica 3.20.20.80 282 14 65 2.93 4.48
1narA00 74.84 NarboninVicia narbonensis 3.20.20.80 289 15 71 3.18 4.43
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1edqA02
ADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGS
FQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKR
DRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKI
DKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTARSVQAKGK
YVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1edqA02
ADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGS
FQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKR
DRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKI
DKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTARSVQAKGK
YVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"