CATH Domain: 1eakA01

1eakA01

PDB 1eak, Chain A, Domain 1

CATH Code	Level Description	Links
1	Mainly Alpha
1.10	Orthogonal Bundle
1.10.101	Muramoyl-pentapeptide Carboxypeptidase; domain 1
1.10.101.10	Muramoyl-pentapeptide Carboxypeptidase, domain 1	Gene3D
1.10.101.10.1
1.10.101.10.1.1
1.10.101.10.1.1.1
1.10.101.10.1.1.1.1
1.10.101.10.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1eakA01

Domain	Start PDB Residue	Stop PDB Residue
1eakA01	45	107
1eakA02	108	218
1eakA02	392	452
1eakA03	220	276
1eakA04	277	335
1eakA05	336	391

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 1.10.101.10.1.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1lbuA01	81.41	Streptomyces albus GZinc D-Ala-D-Ala carboxypeptidase	1.10.101.10	84	12	72	3.43	4.72
	1slmA00	68.16	Stromelysin-1Metalloendopeptidase activityHomo sapiensMatrix metalloproteinase-3 (stromelysin 1, progelatinase) [EC:3.4.24.17]Intracellular membrane-bounded organelle	3.40.390.10	226	42	24	0.79	3.19

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Domain ATOM Sequence

>pdb|1eakA01
TDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDV

BLAST against CATH

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Domain COMBS Sequence

>pdb|1eakA01
TDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDV

BLAST against CATH

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Domain History Events (11)

Domain assigned by auto on 01 Nov 2006 18:06

Assigning to "1.10.101.10" based on similarity with "1eakB01"