CATH Domain: 1e85A00 XML data for domain: 1e85A00

Molscript image for 1e85A00
1e85A00
PDB coordinates for domain 1e85A00

PDB 1e85, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.120 Four Helix Bundle (Hemerythrin (Met), subunit A)
1.20.120.10 Gene3D
1.20.120.10.2
1.20.120.10.2.1
1.20.120.10.2.1.1
1.20.120.10.2.1.1.1
1.20.120.10.2.1.1.1.1

[top]
Segment boundaries for domain 1e85A00

Chopping figure for domain 1e85A00
DomainStart PDB ResidueStop PDB Residue
1e85A00 2 125

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 1.20.120.10.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cpqA00 90.97 Rhodobacter capsulatusCytochrome c' 1.20.120.10 129 29 93 1.64 1.76
1bbhA00 90.79 Allochromatium vinosumCytochrome c' 1.20.120.10 131 29 93 1.56 1.68
2ccyA00 88.93 Phaeospirillum molischianumCytochrome c' 1.20.120.10 127 29 96 2.13 2.22
1mqvA00 88.12 Cytochrome c'Rhodopseudomonas palustris 1.20.120.10 123 23 95 2.27 2.37
1nzeA00 84.63 Spinacia oleraceaOxygen-evolving enhancer protein 3, chloroplastic 1.20.120.290 112 7 85 2.57 3.01
1s05A00 82.46 Cytochrome c-556Rhodopseudomonas palustris 1.20.120.10 129 21 91 2.84 3.10
1k04A02 81.72 Focal adhesion kinase 1Integrin-mediated signaling pathwayCytoskeletonFocal adhesionHomo sapiens 1.20.120.330 104 7 67 3.13 4.62
2p61A00 81.38 Hypothetical proteinThermotoga maritimaPutative uncharacterized protein 1.20.120.490 112 7 83 3.78 4.55
1t6uD00 80.49 Superoxide dismutase [EC:1.15.1.1]Streptomyces coelicolorSuperoxide dismutase [Ni] 1.20.120.400 116 6 84 3.82 4.51
1zzpA00 79.64 DNA damage response, signal transduction resulting in induction of apoptosisProto-oncogene tyrosine-protein kinase ABL1 [EC:2.7.10.2]Pathways in cancerNucleolusNeurotrophin signaling pathway 1.20.120.330 109 8 71 3.36 4.68
2im8A00 79.55 Bacillus subtilisUncharacterized protein yppE 1.20.120.440 120 12 85 3.97 4.64
156b000 79.32 1.20.120.10 103 10 81 3.11 3.82
2r25A00 77.95 MAPK signaling pathway - yeastProtein bindingOsmosensory signaling pathway via two-component systemCytoplasmTransferase activity, transferring phosphorus-containing groups 1.20.120.160 165 8 58 2.45 4.21
2a0bA00 77.44 Two-component systemAerobic respiration control sensor protein ArcBTwo-component signal transduction system (phosphorelay)Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]Peptidyl-histidine phosphorylation 1.20.120.160 118 5 73 3.39 4.62
1r6tA01 72.96 Soluble fractionTryptophanyl-tRNA synthetase, cytoplasmicProtein bindingAminoacyl-tRNA biosynthesisCytoplasm 1.10.287.10 52 9 37 1.50 3.96
[1]
Displaying entries 1 to 15 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1e85A00
FAKPEDAVKYRQSALTLMASHFGRMTPVVKGQAPYDAAQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFKQ
KQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKACHDAYRK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1e85A00
XFAKPEDAVKYRQSALTLMASHFGRMTPVVKGQAPYDAAQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFK
QKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKACHDAYRKKK
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:40

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"