CATH Domain: 1e3oC02 XML data for domain: 1e3oC02

Molscript image for 1e3oC02
1e3oC02
PDB coordinates for domain 1e3oC02

PDB 1e3o, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.31
1.10.10.60.31.1
1.10.10.60.31.1.1
1.10.10.60.31.1.1.1
1.10.10.60.31.1.1.1.1

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Segment boundaries for domain 1e3oC02

Chopping figure for domain 1e3oC02
DomainStart PDB ResidueStop PDB Residue
1e3oC01 5 75
1e3oC02 104 151

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 1.10.10.60.31.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o4xA02 96.41 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 83 84 0.07 0.08
1mh3A03 93.83 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 27 88 0.75 0.85
2dmqA01 89.33 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 22 77 1.23 1.59
1b72A00 88.13 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 29 70 1.00 1.42
1nk3P00 87.65 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 16 76 1.32 1.73
1tc3C00 87.30 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 12 84 2.24 2.66
1gdtB03 84.84 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 8 89 4.19 4.68
1pufB00 84.14 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 20 65 1.40 2.13
1lfbA00 84.04 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 18 61 1.14 1.87
1bobA03 83.07 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 10 85 2.79 3.28
1fexA00 82.95 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 10 81 2.26 2.78
1ic8A02 82.89 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 18 63 1.31 2.06
1le8B00 82.86 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 12 64 1.89 2.91
1wjhA00 82.85 1.10.10.60 76 16 63 2.36 3.74
1k6yA01 82.81 POL polyproteinHuman immunodeficiency virus 1 1.10.10.200 46 6 81 2.37 2.92
1rr7A02 82.40 Middle operon regulatorEnterobacteria phage Mu 1.10.10.60 48 2 85 4.13 4.84
2raeA01 82.33 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 13 89 4.02 4.49
1mnmC00 82.29 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 16 62 1.84 2.95
1iv6A00 81.80 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 8 78 2.93 3.71
1hcrA00 81.50 Salmonella enterica subsp. enterica serovar TyphimuriumDNA-invertase hin 1.10.10.60 52 6 82 2.77 3.35
3ccyA01 81.44 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 18 81 3.68 4.53
1wh5A00 79.84 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 16 60 1.99 3.32
2k9nA02 79.57 MYB24Trichomonas vaginalis 1.10.10.60 54 8 77 3.19 4.10
1hlvA01 79.03 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 58 10 68 3.17 4.60
3bqzA01 78.51 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 14 83 3.41 4.08
1vq8I00 77.19 50S ribosomal protein L11PLarge subunit ribosomal protein L11RibosomeHaloarcula marismortui 1.10.10.250 70 8 57 2.68 4.69
1ignA01 75.87 Chromatin silencing at telomereProtein bindingMyb-like DNA-binding protein RAP1Protection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 93 12 49 1.94 3.92
1ignB02 75.18 Chromatin silencing at telomereMyb-like DNA-binding protein RAP1Protein bindingProtection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 92 14 50 2.02 4.04
3bzcA01 63.74 Pseudomonas aeruginosaPutative uncharacterized protein 1.10.10.650 114 10 21 0.76 3.47
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1e3oC02
KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1e3oC02
KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"