CATH Domain: 1dy9A01 XML data for domain: 1dy9A01

Molscript image for 1dy9A01
1dy9A01
PDB coordinates for domain 1dy9A01

PDB 1dy9, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.120 Gene3D
2.40.10.120.1
2.40.10.120.1.1
2.40.10.120.1.1.1
2.40.10.120.1.1.1.1
2.40.10.120.1.1.1.1.1

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Segment boundaries for domain 1dy9A01

Chopping figure for domain 1dy9A01
DomainStart PDB ResidueStop PDB Residue
1dy9A01 7 94
1dy9A02 95 175

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.40.10.120.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2o8mB01 90.20 Genome polyproteinHepatitis C virus subtype 1a 2.40.10.120 66 78 75 1.34 1.79
1befA01 87.88 2.40.10.120 92 11 88 1.36 1.54
2f4lA02 67.18 Thermotoga maritimaAcetamidase, putative 2.40.10.120 42 7 34 1.60 4.69
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dy9A01
SQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWP
APPGARSM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dy9A01
SQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWP
APPGARSM
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"