CATH Domain: 1dv1B01 XML data for domain: 1dv1B01

Molscript image for 1dv1B01
1dv1B01
PDB coordinates for domain 1dv1B01

PDB 1dv1, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.20 Gene3D
3.40.50.20.8
3.40.50.20.8.1
3.40.50.20.8.1.1
3.40.50.20.8.1.1.1
3.40.50.20.8.1.1.1.1

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Segment boundaries for domain 1dv1B01

Chopping figure for domain 1dv1B01
DomainStart PDB ResidueStop PDB Residue
1dv1B01 1 85
1dv1B02 86 130
1dv1B02 204 444
1dv1B03 131 203

Structural Neighbourhood (36 entries)

There are 36 matching structural neighberhood comparisons for CATH ID 3.40.50.20.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 36 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ulzA01 85.97 Pyruvate carboxylase subunit A [EC:6.4.1.1]Citrate cycle (TCA cycle)Pyruvate metabolismPyruvate carboxylase n-terminal domainAquifex aeolicus 3.40.50.20 129 56 65 1.25 1.92
1p5jA02 82.56 Protein homodimerization activityL-serine ammonia-lyase activityGlycine, serine and threonine metabolismPyruvate biosynthetic processMetabolic pathways 3.40.50.1100 96 10 80 2.63 3.28
1v71A02 81.67 Serine racemaseSchizosaccharomyces pombe 3.40.50.1100 97 14 79 2.78 3.50
2x5oA01 80.85 D-Glutamine and D-glutamate metabolismPeptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylmuramoylalanine--D-glutamate ligaseUDP-N-acetylmuramoylalanine-D-glutamate ligase activity 3.40.50.720 92 12 77 2.60 3.37
1vkzA01 80.59 Thermotoga maritimaPhosphoribosylamine--glycine ligase [EC:6.3.4.13]Purine metabolismPhosphoribosylamine--glycine ligaseMetabolic pathways 3.40.50.20 77 7 75 2.53 3.36
1v7cA02 80.13 Threonine synthase [EC:4.2.3.1]Vitamin B6 metabolismGlycine, serine and threonine metabolismThreonine synthaseMetabolic pathways 3.40.50.1100 97 11 79 3.04 3.83
1g7sA03 80.09 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 3.40.50.10050 81 6 67 2.49 3.71
1p3dA01 79.49 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 8 75 2.52 3.32
1ve1A02 79.26 Thermus thermophilus HB8Cysteine synthase A [EC:2.5.1.47]Selenoamino acid metabolismCysteine synthaseSulfur metabolism 3.40.50.1100 108 12 71 2.80 3.93
1f2dA02 79.21 Williopsis saturnus1-aminocyclopropane-1-carboxylate deaminase 3.40.50.1100 102 10 80 3.11 3.87
3eagA01 78.99 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 10 80 3.11 3.85
2vheA01 78.97 Campylobacter jejuniAcetyltransferase 3.40.50.20 75 9 64 2.55 3.94
1p5dX02 78.94 Amino sugar and nucleotide sugar metabolismGalactose metabolismFructose and mannose metabolismMetabolic pathwaysStarch and sucrose metabolism 3.40.120.10 78 12 75 3.75 4.98
1j0aA02 78.82 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]Pyrococcus horikoshiiPropanoate metabolismPutative 1-aminocyclopropane-1-carboxylate deaminase 3.40.50.1100 104 16 75 2.82 3.76
1j6uA01 78.32 D-Glutamine and D-glutamate metabolismThermotoga maritimaUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Peptidoglycan biosynthesis 3.40.50.720 85 7 78 2.93 3.72
2pfsA01 78.29 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 11 67 2.56 3.79
1iowA01 78.21 D-Alanine metabolismPeptidoglycan biosynthesisD-alanine--D-alanine ligase BD-alanine-D-alanine ligase [EC:6.3.2.4]Escherichia coli K-12 3.40.50.20 84 13 65 3.14 4.77
1m1nB03 77.90 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 8 69 3.27 4.68
2iksA01 77.80 LacI family transcriptional regulator, fructose operon transcriptional repressorFructose repressorEscherichia coli K-12 3.40.50.2300 95 11 64 2.86 4.45
1pjqA01 77.21 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.40.50.720 112 10 61 2.60 4.22
2pn1A01 77.17 Pyrimidine metabolismExiguobacterium sibiricum 255-15Alanine, aspartate and glutamate metabolismCarbamoyl-phosphate synthase large subunit [EC:6.3.5.5]Metabolic pathways 3.40.50.20 119 11 66 2.69 4.05
1mioB04 76.62 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 8 75 3.42 4.53
2ho3A01 75.94 Oxidoreductase, Gfo/Idh/MocA familyStreptococcus pneumoniae 3.40.50.720 113 5 59 2.88 4.86
1bxrA05 75.88 3.40.50.20 140 11 53 2.52 4.70
1efdN01 75.87 ABC transportersIron(3+)-hydroxamate-binding protein fhuDIron complex transport system substrate-binding proteinEscherichia coli K-12 3.40.50.1980 91 10 76 3.60 4.68
3eq2B01 75.40 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 3 54 2.64 4.86
1jflA02 75.36 Aspartate racemase [EC:5.1.1.13]228aa long hypothetical aspartate racemasePyrococcus horikoshiiAlanine, aspartate and glutamate metabolism 3.40.50.1860 109 9 64 3.20 4.98
2aefA01 75.28 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 15 63 3.01 4.74
1lluA02 75.05 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 12 52 2.43 4.59
2q5cA02 74.90 Clostridium acetobutylicumNtrC family transcriptional regulator (PAS and AAA domains) 3.40.50.10660 89 8 68 3.31 4.83
1pl8A02 74.25 Membrane fractionZinc ion bindingL-iditol 2-dehydrogenase [EC:1.1.1.14]Sorbitol catabolic processGlucose metabolic process 3.40.50.720 139 20 56 2.77 4.94
2gfqA02 73.32 Hypothetical proteinPyrococcus horikoshiiD-tyrosyl-tRNA(Tyr) deacylase 3.40.50.10700 87 8 71 3.53 4.95
1lssA00 73.16 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 14 56 2.80 4.99
2g76A01 72.71 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseGlycine, serine and threonine metabolismBrain developmentMetabolic pathways 3.40.50.720 112 8 47 2.07 4.37
1cvrA01 71.84 Gingipain R [EC:3.4.22.37]Porphyromonas gingivalisGingipain R2 3.40.50.10390 117 5 54 2.73 4.99
1z0sA01 71.62 Archaeoglobus fulgidusProbable inorganic polyphosphate/ATP-NAD kinaseNAD+ kinase [EC:2.7.1.23]Nicotinate and nicotinamide metabolismMetabolic pathways 3.40.50.10330 123 9 39 1.92 4.82
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Displaying entries 1 to 36 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dv1B01
MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHP
GYGFL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dv1B01
MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHP
GYGFL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"