CATH Domain: 1dszA00 XML data for domain: 1dszA00

Molscript image for 1dszA00
1dszA00
PDB coordinates for domain 1dszA00

PDB 1dsz, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.50 Erythroid Transcription Factor GATA-1; Chain A
3.30.50.10 Erythroid Transcription Factor GATA-1, subunit A Gene3D
3.30.50.10.2
3.30.50.10.2.1
3.30.50.10.2.1.1
3.30.50.10.2.1.1.1
3.30.50.10.2.1.1.1.1

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Segment boundaries for domain 1dszA00

Chopping figure for domain 1dszA00
DomainStart PDB ResidueStop PDB Residue
1dszA00 1134 1208

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.30.50.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hcqB00 93.79 Estrogen receptorTranscription, DNA-dependentPositive regulation of retinoic acid receptor signaling pathwayNuclear receptor, subfamily 3, group A, member 1Homo sapiens 3.30.50.10 71 56 92 1.04 1.13
1kb2B00 92.93 Vitamin D3 receptorVitamin D receptor signaling pathwayNuclear receptor, subfamily 1, group I, member 1Retinoid X receptor bindingPositive regulation of vitamin D 24-hydroxylase activity 3.30.50.10 85 45 88 0.68 0.77
2nllA00 92.80 Retinoic acid receptor RXR-alphaPPAR signaling pathwayVitamin metabolic processPathways in cancerNuclear receptor, subfamily 2, group B, member 1 3.30.50.10 66 60 88 0.79 0.90
2a66A00 92.16 Promoter bindingPositive regulation of gene-specific transcriptionNucleusProtein bindingNuclear receptor, subfamily 5, group A, member 2 3.30.50.10 95 58 78 0.58 0.73
2ia1B02 75.60 BH3703 proteinBacillus halodurans 1.10.10.10 51 3 58 2.87 4.89
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dszA00
PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRND
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dszA00
PRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRND
RNKKKK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:58

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:58

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"