CATH Domain: 1dq3A04 XML data for domain: 1dq3A04

Molscript image for 1dq3A04
1dq3A04
PDB coordinates for domain 1dq3A04

PDB 1dq3, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.28 Endonuclease I-creI
3.10.28.10 Homing endonucleases Gene3D
3.10.28.10.5
3.10.28.10.5.1
3.10.28.10.5.1.1
3.10.28.10.5.1.1.1
3.10.28.10.5.1.1.1.1

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Segment boundaries for domain 1dq3A04

Chopping figure for domain 1dq3A04
DomainStart PDB ResidueStop PDB Residue
1dq3A01 1 137
1dq3A01 415 454
1dq3A02 339 414
1dq3A03 138 224
1dq3A04 225 338

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.10.28.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vs7A02 82.62 Desulfurococcus mobilisHoming endonuclease I-DmoI 3.10.28.10 78 29 68 2.30 3.36
1dfaA03 82.08 Vacuolar acidificationOxidative phosphorylationCellular protein metabolic processEndodeoxyribonuclease activityProtein binding 3.10.28.10 95 14 75 2.74 3.63
3c0wA02 80.95 Endonuclease activity[EC:3.1.-.-]Saccharomyces cerevisiaeIntron-encoded endonuclease I-SceIMitochondrion 3.10.28.10 103 15 80 2.90 3.59
1dq3A03 80.29 Pyrimidine metabolismPyrococcus furiosusPurine metabolismRibonucleoside-diphosphate reductaseRibonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 3.10.28.10 87 13 65 2.13 3.24
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dq3A04
NGIPPQILKEGKNAVLSFIAGLFDAEGHVSNKPGIELGMVNKRLIEDVTHYLNALGIKARIREKLRKDGIDYVLHVEEYS
SLLRFYELIGKNLQNEEKREKLEKVLSNHKGGNF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dq3A04
NGIPPQILKEGKNAVLSFIAGLFDAEGHVSNKPGIELGMVNKRLIEDVTHYLNALGIKARIREKLRKDGIDYVLHVEEYS
SLLRFYELIGKNLQNEEKREKLEKVLSNHKGGNF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:22

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"