CATH Domain: 1dpjA02 XML data for domain: 1dpjA02

Molscript image for 1dpjA02
1dpjA02
PDB coordinates for domain 1dpjA02

PDB 1dpj, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.10
2.40.70.10.10.1
2.40.70.10.10.1.1
2.40.70.10.10.1.1.1
2.40.70.10.10.1.1.1.1

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Segment boundaries for domain 1dpjA02

Chopping figure for domain 1dpjA02
DomainStart PDB ResidueStop PDB Residue
1dpjA01 0 170
1dpjA02 171 325

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.40.70.10.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hrnA02 89.09 Renin-angiotensin systemAngiotensin maturationRegulation of MAPKKK cascadeExtracellular spaceRenin 2.40.70.10 158 31 96 2.04 2.11
1j71A02 85.35 Candida tropicalisCandidapepsin 2.40.70.10 161 25 89 2.43 2.72
1lyaB00 82.53 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 241 37 63 1.80 2.84
2zjlA02 82.27 Beta-secretase 1Integral to plasma membraneBeta-aspartyl-peptidase activityProtein bindingBeta-amyloid metabolic process 2.40.70.10 197 20 70 3.44 4.91
1mppA02 81.58 Rhizomucor pusillusMucorpepsin 2.40.70.10 175 21 82 3.13 3.78
1pfzA02 80.92 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 213 28 69 3.40 4.93
1b5fB00 80.66 Preprocardosin ACynara cardunculus 2.40.70.10 87 39 53 1.33 2.50
1t6eX02 79.84 Triticum aestivumXylanase inhibitor 2.40.70.10 187 16 80 3.12 3.86
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dpjA02
DESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNT
RDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dpjA02
DESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNT
RDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:22

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"