CATH Domain: 1dp5B00 XML data for domain: 1dp5B00

Molscript image for 1dp5B00
1dp5B00
PDB coordinates for domain 1dp5B00

PDB 1dp5, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.140 Gene3D
1.20.5.140.3
1.20.5.140.3.1
1.20.5.140.3.1.1
1.20.5.140.3.1.1.1
1.20.5.140.3.1.1.1.1

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Segment boundaries for domain 1dp5B00

Chopping figure for domain 1dp5B00
DomainStart PDB ResidueStop PDB Residue
1dp5B00 2 32

Structural Neighbourhood (124 entries)

There are 124 matching structural neighberhood comparisons for CATH ID 1.20.5.140.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 124 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1a2xB00 93.34 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 6 90 0.70 0.78
1piqA00 90.77 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 3 83 0.75 0.89
1jekA00 89.16 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 6 75 0.88 1.17
2zxeB01 88.65 1.20.5.170 35 9 85 1.95 2.27
1jmmA01 88.14 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 6 87 1.38 1.58
1slqF02 87.98 Outer capsid protein VP4Rhesus rotavirus 1.20.5.170 32 12 96 3.21 3.31
1vf5C03 87.97 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 3 78 0.90 1.15
2p7jB01 87.31 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 6 71 1.41 1.96
1g2cB00 86.90 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 0 77 1.25 1.61
1omiA02 86.85 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 7 74 1.02 1.37
1nkzB00 86.77 Rhodoblastus acidophilusLight-harvesting protein B-800/850 beta chain 1.20.5.250 41 6 75 2.39 3.16
1r8eA03 86.69 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 6 70 0.84 1.19
1owaA01 86.41 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 3 84 1.88 2.23
1ow6A01 86.40 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 3 96 3.97 4.10
1junA00 86.33 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 12 72 0.97 1.35
2hr3A01 86.17 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 3 77 1.41 1.82
1m56D00 85.97 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 3 71 1.06 1.48
2oarE02 85.76 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 4 67 1.53 2.26
1kmiZ01 85.57 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 6 93 3.38 3.61
1fdoA05 85.54 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 3 70 0.74 1.04
3clqB01 85.17 Enterococcus faecalisPutative uncharacterized protein 1.20.5.220 24 0 77 2.92 3.77
1be3K00 85.12 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 4 70 1.13 1.59
1s5lX00 84.98 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 9 77 2.56 3.30
2basA02 84.48 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 9 67 1.10 1.63
1qexA01 84.34 Enterobacteria phage T4Baseplate structural protein Gp9 1.20.5.960 35 6 85 3.40 3.97
1ci6B00 84.18 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 19 65 0.91 1.38
3e7kA00 83.98 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 9 55 0.58 1.04
1kilE00 83.96 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 75 1.93 2.55
1m7lA00 83.85 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 0 77 1.57 2.03
2o1kA00 83.83 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 3 71 1.50 2.10
1t6aA01 83.79 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 12 67 2.30 3.41
2k1aA00 83.73 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 3 73 2.04 2.76
2p10B02 83.71 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 7 77 2.11 2.73
1xrdA01 83.50 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 0 72 1.84 2.55
2v7qJ00 83.48 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 43 9 72 2.50 3.47
1n2dC00 83.40 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 12 64 1.39 2.15
3kpeA00 83.25 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 3 61 1.10 1.78
1tiiC00 83.18 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 3 61 1.43 2.34
1mqsB00 83.01 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 3 77 1.70 2.20
1gmjD00 82.77 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 3 55 0.86 1.55
2qjyC01 82.52 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 6 63 1.82 2.86
2ifoA00 82.52 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 6 67 1.18 1.75
1gk6B00 82.46 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 22 59 1.06 1.78
2rh0A02 82.44 Mus musculusNudC domain-containing protein 2 1.20.5.740 29 3 61 1.62 2.64
1wa9B03 82.42 Regulation of circadian sleep/wake cycle, sleepPeriod circadian proteinNucleusResponse to temperature stimulusNegative regulation of transcription from RNA polymerase II promoter 1.20.5.770 33 16 72 3.09 4.25
1jnmA00 82.32 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 56 6 55 0.79 1.43
3efgA00 82.26 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 12 59 1.00 1.69
1lghB00 82.12 Phaeospirillum molischianumLight-harvesting protein B-800/850 beta 1 chain 1.20.5.250 43 12 72 2.31 3.20
1go9A00 82.10 1.20.5.480 39 6 76 2.37 3.08
1ifpA00 82.04 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 16 63 1.21 1.90
1hf9A00 82.01 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 16 58 1.03 1.76
2k9yA00 81.45 ApoptosisIntegral to plasma membraneEphrin type-A receptor 2Homo sapiensEph receptor A2 [EC:2.7.10.1] 1.20.5.510 41 6 75 2.98 3.94
1s3jB01 81.30 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 13 58 1.53 2.63
4hb1A00 81.28 1.20.5.420 44 6 54 1.99 3.65
1jb0J00 81.17 PhotosynthesisPhotosystem I subunit IXPhotosystem I reaction center subunit IXThermosynechococcus elongatus BP-1Metabolic pathways 1.20.5.510 41 3 75 2.92 3.86
1dh3A00 81.11 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 6 56 0.61 1.08
2g3aA01 80.91 Agrobacterium tumefaciens str. C58Acetyltransferase 1.20.5.540 31 0 67 3.09 4.56
2oarA02 80.73 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 54 0.61 1.11
2rklB00 80.69 Multivesicular bodyVacuolar protein sorting-associated protein VTA1Membrane fractionProtein bindingEndocytosis 1.20.5.420 50 6 62 1.56 2.52
2g8yA03 80.61 Uncharacterized oxidoreductase [EC:1.1.1.-]Uncharacterized oxidoreductase ybiCEscherichia coli K-12 1.20.5.460 28 7 74 2.69 3.63
3ii6A02 80.30 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 22 53 1.00 1.87
1u57A00 80.11 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 9 64 2.01 3.11
2zjsE00 79.58 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 9 67 2.02 3.00
3c8vA04 79.10 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 10 61 1.46 2.38
1dipB01 79.06 Sus scrofaTSC22 domain family protein 3 1.20.5.490 45 6 48 0.72 1.47
1kv4A00 78.97 Moricin-1Bombyx mori 1.20.5.750 42 6 59 2.02 3.39
1ybkA00 78.81 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 0 50 0.93 1.86
1nwqA00 78.81 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 16 51 1.16 2.25
2h88C01 78.65 Gallus gallusSuccinate dehydrogenase cytochrome b, large subunit 1.20.5.540 31 0 64 3.12 4.84
1l2pA00 78.65 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 16 50 1.37 2.70
3cx5E01 78.60 Cytochrome b-c1 complex subunit Rieske, mitochondrialMitochondrial respiratory chain complex IIIOxidative phosphorylationMetabolic pathwaysAerobic respiration 1.20.5.270 55 3 56 2.56 4.54
1ik7A00 78.22 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 9 57 2.24 3.88
1h8bB00 77.79 TitinOryctolagus cuniculus 1.20.5.510 23 8 48 0.64 1.32
2wscH01 77.74 Photosystem I reaction center subunit VI, chloroplasticSpinacia oleracea 1.20.5.220 23 8 70 2.16 3.04
2qiwA02 77.36 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 5 51 0.67 1.30
1wt6B00 77.30 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 16 46 0.97 2.10
1svfC00 77.26 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 3 50 1.54 3.08
1ci6A00 77.24 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 3 44 0.85 1.90
1jcdB00 77.23 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 12 51 1.70 3.27
1l0nK00 77.21 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Parkinson's diseaseOxidative phosphorylationAlzheimer's disease 1.20.5.220 49 6 61 2.52 4.12
1mslA02 77.19 1.20.5.220 18 0 51 1.02 1.98
1pp9J00 76.86 Cardiac muscle contractionParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseUbiquinol-cytochrome c reductase subunit 9 [EC:1.10.2.2] 1.20.5.260 61 3 50 2.24 4.41
2o01J01 76.72 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 0 58 1.85 3.19
1uixA00 76.56 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 12 45 1.01 2.22
1gk4C00 76.56 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 6 44 1.04 2.35
1fjkA00 76.33 Calcium signaling pathwayDilated cardiomyopathySus scrofaCardiac phospholambanPhospholamban 1.20.5.290 52 3 57 2.19 3.80
2dw3A01 76.29 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 6 56 2.48 4.40
2r44A01 75.86 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 48 1.09 2.25
1onvB00 75.72 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 19 67 2.51 3.71
1vl2B03 75.59 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 3 58 2.62 4.51
1d66B02 75.48 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 48 0.52 1.07
1avyB00 75.42 Enterobacteria phage T4Fibritin 1.20.5.320 54 3 44 1.14 2.56
1jocA01 75.26 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 9 41 1.01 2.42
1gaxA05 75.14 Aminoacyl-tRNA biosynthesisValyl-tRNA synthetase [EC:6.1.1.9]Valyl-tRNA synthetaseValine, leucine and isoleucine biosynthesisThermus thermophilus 1.10.287.380 73 9 42 1.65 3.89
2w83C00 74.96 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 3 46 1.63 3.52
1j1dB00 74.92 Response to calcium ionTroponin C bindingPositive regulation of ATPase activityActin bindingNegative regulation of ATPase activity 1.20.5.350 70 6 44 1.30 2.94
2k37A00 74.76 Bacteriochlorophyll c-binding proteinChlorobaculum tepidumChlorosome envelope protein A 1.20.5.950 59 0 52 2.17 4.13
1avyA00 74.40 Enterobacteria phage T4Fibritin 1.20.5.320 68 3 45 1.61 3.53
1y9bA00 74.17 Vibrio choleraePutative uncharacterized protein 1.20.5.780 78 16 38 1.43 3.72
1ic2B00 73.91 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 9 38 1.03 2.64
1ik9B02 73.74 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 22 37 1.02 2.73
1hj0A00 73.59 Bos taurusThymosin beta-10 1.20.5.520 41 6 43 1.33 3.03
1a02F00 73.09 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 6 37 0.78 2.07
1pp9E01 72.83 Cytochrome b-c1 complex subunit Rieske, mitochondrialBos taurus 1.20.5.270 64 6 48 2.32 4.79
2jdiH02 72.76 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 1.20.5.440 42 0 42 0.88 2.05
2p2uA01 72.65 Desulfovibrio vulgaris str. HildenboroughHost-nuclease inhibitor protein Gam, putative 1.20.5.170 69 9 44 2.02 4.50
1no4C00 72.59 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 16 42 1.86 4.38
1mkmA02 72.23 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 45 0.79 1.75
1nknA00 71.94 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 6 41 2.01 4.80
2zvoB00 71.77 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 6 35 1.21 3.43
2pjuD03 71.53 Positive regulation of gene-specific transcriptionPropionate catabolism operon regulatory proteinNegative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activity 1.20.5.170 41 12 36 0.55 1.50
2wpqA00 70.61 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 6 31 0.79 2.52
2jo1A00 70.33 Muscle contractionIntegral to plasma membraneFXYD domain-containing ion transport regulator 1PhospholemmanHomo sapiens 1.20.5.780 72 9 43 1.65 3.83
1ytzT00 70.18 Troponin T, fast skeletal muscle isoformsGallus gallus 1.20.5.350 90 0 34 1.19 3.45
1m8oB00 69.76 Positive regulation of endothelial cell migrationPlatelet-derived growth factor receptor bindingPositive regulation of endothelial cell proliferationActivation of protein kinase activityRegulation of bone resorption 1.20.5.630 47 6 46 2.05 4.38
1deeG00 69.74 Staphylococcus aureus subsp. aureus NCTC 8325Immunoglobulin G-binding protein A 1.20.5.420 51 6 43 2.06 4.78
1pl5A00 68.75 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 6 29 0.78 2.66
1cunA02 68.68 Spectrin alpha chain, brainGallus gallusSpectrin alpha 1.20.58.60 103 3 30 1.46 4.85
1ox3A00 68.04 Enterobacteria phage T4Fibritin 1.20.5.320 108 0 28 1.19 4.15
1d7mA00 66.60 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 9 29 1.41 4.75
1g4yB00 66.21 Rattus norvegicusSmall conductance calcium-activated potassium channel protein 2Small conductance calcium-activated potassium channel activityIntegral to membranePotassium ion transport 1.10.287.70 81 12 27 1.03 3.79
1f8vE00 65.85 Pariacato virusProtein alpha 1.20.5.280 21 0 38 1.63 4.21
2pgdA03 64.86 Ovis aries6-phosphogluconate dehydrogenase, decarboxylating 1.20.5.320 38 3 34 1.29 3.77
1rzhH01 51.89 Rhodobacter sphaeroidesReaction center protein H chain 4.10.540.10 105 9 13 0.47 3.52
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Displaying entries 1 to 124 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dp5B00
NTDQQKVSEIFQSSKEKLQGDAKVVSDAFMM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dp5B00
MNTDQQKVSEIFQSSKEKLQGDAKVVSDAFMM
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"