CATH Domain: 1dkuA02 XML data for domain: 1dkuA02

Molscript image for 1dkuA02
1dkuA02
PDB coordinates for domain 1dkuA02

PDB 1dku, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.2020 Gene3D
3.40.50.2020.16
3.40.50.2020.16.1
3.40.50.2020.16.1.1
3.40.50.2020.16.1.1.1
3.40.50.2020.16.1.1.1.1

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Segment boundaries for domain 1dkuA02

Chopping figure for domain 1dkuA02
DomainStart PDB ResidueStop PDB Residue
1dkuA01 152 292
1dkuA02 8 151
1dkuA02 293 315

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.40.50.2020.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1u9yA01 88.67 Methanocaldococcus jannaschiiRibose-phosphate pyrophosphokinase 3.40.50.2020 150 27 89 1.44 1.60
1u9yA02 79.28 Methanocaldococcus jannaschiiRibose-phosphate pyrophosphokinase 3.40.50.2020 124 15 64 2.42 3.74
1dkuA01 78.92 Ribose-phosphate pyrophosphokinase [EC:2.7.6.1]Bacillus subtilisPurine metabolismPentose phosphate pathwayRibose-phosphate pyrophosphokinase 3.40.50.2020 128 11 67 2.55 3.80
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dkuA02
NLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASA
KTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMSVGPLLAEAIIRVHEQ
QSVSYLF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dkuA02
MSNQYGDKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMV
DALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMSVGPLLAE
AIIRVHEQQSVSYLFS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:21

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"