CATH Domain: 1di2A00 XML data for domain: 1di2A00

Molscript image for 1di2A00
1di2A00
PDB coordinates for domain 1di2A00

PDB 1di2, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.20 Gene3D
3.30.160.20.1
3.30.160.20.1.1
3.30.160.20.1.1.1
3.30.160.20.1.1.1.1
3.30.160.20.1.1.1.1.1

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Segment boundaries for domain 1di2A00

Chopping figure for domain 1di2A00
DomainStart PDB ResidueStop PDB Residue
1di2A00 112 180

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.30.160.20.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o0wA02 92.35 Thermotoga maritimaRibonuclease 3Ribonuclease III [EC:3.1.26.3] 3.30.160.20 68 26 97 2.45 2.52
1x49A01 90.77 TranslationInterferon-induced, double-stranded RNA-activated protein kinaseProtein bindingEndoplasmic reticulum unfolded protein responseMus musculus 3.30.160.20 70 26 97 1.57 1.62
1stuA00 87.10 Cytoplasmic mRNA processing bodyAsymmetric protein localization involved in cell fate determinationDrosophila melanogasterApical cortexBasal cortex 3.30.160.20 68 30 97 3.22 3.32
2b7vA00 86.94 Rattus norvegicusNucleolusDouble-stranded RNA-specific editase 1MRNA modificationNucleoplasm 3.30.160.20 71 30 90 2.40 2.66
1qu6A02 86.70 Eukaryotic translation initiation factor 2alpha kinase activityProtein phosphatase type 2A regulator activityInterferon-induced, double-stranded RNA-activated protein kinaseProtein bindingNegative regulation of osteoblast proliferation 3.30.160.20 76 23 86 2.11 2.43
1t4oA00 85.80 RRNA processingRRNA transcriptionU1 snRNA 3'-end processingRibonuclease 3Nucleolus 3.30.160.20 81 23 82 2.82 3.41
2vqeE01 85.09 RibosomeSmall subunit ribosomal protein S5Thermus thermophilus HB830S ribosomal protein S5 3.30.160.20 64 7 79 2.77 3.48
1l4sA01 80.08 Ribosome-associated inhibitor ARibosome-associated inhibitor ACytosolic small ribosomal subunitEscherichia coli K-12 3.30.160.100 91 18 70 3.20 4.55
2rqlA00 79.44 Protein bindingPutative sigma-54 modulation proteinEscherichia coli K-12Probable sigma(54) modulation protein 3.30.160.100 95 8 65 3.19 4.89
1gtkA03 78.28 Metabolic pathwaysPorphyrin and chlorophyll metabolismHydroxymethylbilane synthase activityEscherichia coli K-12Cytoplasm 3.30.160.40 86 13 69 3.41 4.89
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1di2A00
MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKFKT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1di2A00
MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKFKT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"