CATH Domain: 1dh3A00 XML data for domain: 1dh3A00

Molscript image for 1dh3A00
1dh3A00
PDB coordinates for domain 1dh3A00

PDB 1dh3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.19
1.20.5.170.19.1
1.20.5.170.19.1.1
1.20.5.170.19.1.1.1
1.20.5.170.19.1.1.1.1

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Segment boundaries for domain 1dh3A00

Chopping figure for domain 1dh3A00
DomainStart PDB ResidueStop PDB Residue
1dh3A00 285 339

Structural Neighbourhood (63 entries)

There are 63 matching structural neighberhood comparisons for CATH ID 1.20.5.170.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 63 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jcdB00 88.28 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 7 94 1.80 1.90
1jekA00 86.79 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 10 70 1.00 1.41
1nwqA00 86.48 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 10 76 0.99 1.29
3e7kA00 86.22 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 5 96 2.36 2.45
1gmjD00 85.75 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 9 83 1.74 2.07
1l2pA00 85.70 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 9 72 0.98 1.36
3ii6A02 85.55 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 12 94 2.68 2.83
1gk4C00 84.61 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 10 78 1.75 2.23
1ic2B00 83.45 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 14 71 1.51 2.11
1ezjA02 83.18 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 11 85 2.61 3.05
1kilE00 83.01 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 12 74 2.65 3.55
2b9bA04 82.83 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 5 88 4.24 4.78
1n2dC00 82.75 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 12 80 2.49 3.11
1hf9A00 82.73 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 2 74 1.44 1.93
2o1kA00 82.70 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 9 76 2.60 3.40
1junA00 82.70 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 4 65 1.36 2.08
2ifoA00 82.47 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 0 83 2.92 3.49
1r8eA03 82.37 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 4 65 1.22 1.86
1pl5A00 81.67 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 16 70 1.99 2.82
1tiiC00 81.49 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 5 60 1.52 2.53
1ik7A00 81.44 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 13 69 1.79 2.59
1nknA00 81.10 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 10 74 2.41 3.24
1avyA00 81.10 Enterobacteria phage T4Fibritin 1.20.5.320 68 9 79 3.83 4.82
3kpeA00 80.72 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 2 60 1.30 2.17
1qgkB00 80.66 DNA metabolic processG2 phase of mitotic cell cycleNuclear localization sequence bindingRegulation of DNA recombinationImportin subunit alpha-2 1.20.5.690 44 15 60 2.70 4.50
2qjyC01 80.11 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 3 60 1.60 2.67
1favA00 80.06 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 7 56 1.22 2.16
1a2xB00 79.80 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 16 56 1.18 2.09
3gwoA00 79.51 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 3 50 0.70 1.38
1uixA00 79.44 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 7 57 1.58 2.75
1rh5B00 79.30 Protein transport protein SEC61 subunit gamma and related proteinsProtein exportMethanocaldococcus jannaschiiPreprotein translocase subunit secE 1.20.5.820 56 3 60 1.83 3.01
1s5lX00 78.49 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 7 67 3.06 4.55
1jocA01 78.44 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 9 50 1.13 2.26
3cx5E01 78.34 Cytochrome b-c1 complex subunit Rieske, mitochondrialMitochondrial respiratory chain complex IIIOxidative phosphorylationMetabolic pathwaysAerobic respiration 1.20.5.270 55 3 50 1.30 2.55
1xrdA01 78.21 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 11 76 3.09 4.05
2zxeB01 77.77 1.20.5.170 35 2 47 0.59 1.25
2wpqA00 77.61 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 5 55 1.39 2.50
1j1dB00 77.47 Response to calcium ionTroponin C bindingPositive regulation of ATPase activityActin bindingNegative regulation of ATPase activity 1.20.5.350 70 1 60 2.40 4.00
1go9A00 77.02 1.20.5.480 39 10 69 3.22 4.66
1wdcA00 76.97 Myosin heavy chain, striated muscleArgopecten irradians 4.10.270.10 64 7 60 2.54 4.17
1svfC00 76.86 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 1 53 2.13 4.00
1fdoA05 76.57 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 14 49 1.42 2.89
1omiA02 76.12 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 0 41 0.48 1.15
3efgA00 76.02 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 6 45 0.79 1.74
2w83C00 75.93 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 3 47 1.26 2.64
2r44A01 74.74 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 11 47 0.92 1.95
1ybkA00 74.62 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 9 56 2.32 4.12
1kv4A00 74.61 Moricin-1Bombyx mori 1.20.5.750 42 4 54 2.58 4.73
1s3jB01 73.59 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 3 49 2.16 4.40
2p10B02 73.24 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 11 47 1.82 3.85
1k04A01 72.61 Focal adhesion kinase 1Focal adhesionIntegrin-mediated signaling pathwayCytoskeletonHomo sapiens 1.20.5.540 38 5 40 1.75 4.38
2oarE02 72.45 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 18 40 1.30 3.25
3fx7A00 72.24 Helicobacter pyloriPutative uncharacterized protein 1.10.287.850 83 14 39 1.52 3.82
3c8vA04 71.81 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 34 0.55 1.59
1jmmA01 71.66 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 15 38 0.98 2.57
1be3K00 71.63 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 0 38 0.87 2.28
1bmfG00 70.85 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 122 7 40 1.16 2.89
1kmiZ02 69.82 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.10.287.500 134 7 41 1.53 3.73
2k9yA00 68.68 ApoptosisIntegral to plasma membraneEphrin type-A receptor 2Homo sapiensEph receptor A2 [EC:2.7.10.1] 1.20.5.510 41 2 41 1.90 4.54
1mslA02 66.97 1.20.5.220 18 0 32 1.21 3.70
2oarA02 65.96 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 5 29 0.54 1.86
1d66B02 63.71 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 27 0.45 1.65
1mkmA02 60.55 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 14 25 0.69 2.71
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Displaying entries 1 to 63 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dh3A00
KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dh3A00
KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"