CATH Domain: 1dgsA06 XML data for domain: 1dgsA06

Molscript image for 1dgsA06
1dgsA06
PDB coordinates for domain 1dgsA06

PDB 1dgs, Chain A, Domain 6

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.16
1.10.150.20.16.1
1.10.150.20.16.1.1
1.10.150.20.16.1.1.1
1.10.150.20.16.1.1.1.1

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Segment boundaries for domain 1dgsA06

Chopping figure for domain 1dgsA06
DomainStart PDB ResidueStop PDB Residue
1dgsA01 1 76
1dgsA02 84 118
1dgsA02 251 310
1dgsA03 119 250
1dgsA04 317 389
1dgsA05 430 498
1dgsA06 499 581

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 1.10.150.20.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ztdA02 83.05 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.150.20 68 23 75 2.69 3.54
1bvsA02 82.61 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.150.20 70 24 79 3.50 4.40
1dgsA05 81.75 DNA ligaseThermus filiformis 1.10.150.20 69 15 72 2.30 3.18
1x9xA00 79.20 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 12 72 2.76 3.82
1z1vA00 79.19 Protein kinase regulator activitySAM domain bindingProtein STE50Signal transduction involved in filamentous growthPheromone-dependent signal transduction involved in conjugation with cellular fusion 1.10.150.50 70 12 79 3.59 4.51
1dxsA00 79.02 DNA damage response, signal transduction resulting in induction of apoptosisTranscription factor bindingProtein bindingPositive regulation of transcription, DNA-dependentMismatch repair 1.10.150.50 57 14 67 2.73 4.05
2dflA01 77.40 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 21 71 3.07 4.32
1oxjA01 76.99 Cytoplasmic mRNA processing bodyNuclear-transcribed mRNA poly(A) tail shorteningEstablishment of RNA localizationProtein SmaugDrosophila melanogaster 1.10.150.50 61 9 67 2.90 4.30
2q0zX02 76.65 ATP-dependent helicase activityPre-mRNA-splicing helicase BRR2 [EC:3.6.1.-]Protein bindingU5 small nuclear ribonucleoprotein 200 kDa helicaseU5 snRNP 1.10.150.20 56 10 67 2.99 4.43
2a19A02 74.57 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 complexEukaryotic translation initiation factor 2 subunit alphaSaccharomyces cerevisiae 1.10.150.190 85 7 74 3.51 4.74
2dmqA01 72.60 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 8 65 3.07 4.72
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dgsA06
KHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSM
ESK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dgsA06
KHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSM
ESK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:21

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"