CATH Domain: 1dg6A00 XML data for domain: 1dg6A00

Molscript image for 1dg6A00
1dg6A00
PDB coordinates for domain 1dg6A00

PDB 1dg6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.40 Gene3D
2.60.120.40.2
2.60.120.40.2.1
2.60.120.40.2.1.1
2.60.120.40.2.1.1.1
2.60.120.40.2.1.1.1.1

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Segment boundaries for domain 1dg6A00

Chopping figure for domain 1dg6A00
DomainStart PDB ResidueStop PDB Residue
1dg6A00 120 281

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.60.120.40.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1alyA00 87.33 Soluble fractionAutoimmune thyroid diseaseIntestinal immune network for IgA productionAllograft rejectionT cell receptor signaling pathway 2.60.120.40 146 21 93 4.61 4.94
1xu1A00 86.13 Mus musculusImmunoglobulin production in mucosal tissueExternal side of plasma membranePositive regulation of germinal center formationTumor necrosis factor ligand superfamily member 13 2.60.120.40 137 18 88 4.38 4.94
2q8oA00 83.06 Mus musculusGITR ligand 2.60.120.40 125 18 75 2.65 3.53
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dg6A00
QRVAAHITGTRKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYFRFQEKENTKNDKQMVQYIYK
YTSYPAPILLMKSARNSCWSKDAEYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAFLVG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dg6A00
QRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYFRFQEEIKEN
TKNDKQMVQYIYKYTSYPAPILLMKSARNSCWSKDAEYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAFL
VG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"