CATH Domain: 1dfuP00 XML data for domain: 1dfuP00

Molscript image for 1dfuP00
1dfuP00
PDB coordinates for domain 1dfuP00

PDB 1dfu, Chain P, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.240 Ribosomal Protein L25; Chain P
2.40.240.10 Ribosomal Protein L25; Chain P Gene3D
2.40.240.10.1
2.40.240.10.1.1
2.40.240.10.1.1.1
2.40.240.10.1.1.1.1
2.40.240.10.1.1.1.1.1

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Segment boundaries for domain 1dfuP00

Chopping figure for domain 1dfuP00
DomainStart PDB ResidueStop PDB Residue
1dfuP00 1 94

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.40.240.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1feuA01 90.58 50S ribosomal protein L25Thermus thermophilus 2.40.240.10 91 17 94 1.40 1.48
1qtqA02 76.46 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 2.40.240.10 90 7 64 2.46 3.79
1qtqA01 75.89 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 2.40.240.10 107 7 60 2.77 4.56
1v6zA01 73.75 Thermus thermophilus HB27Ribosomal RNA small subunit methyltransferase E [EC:2.1.1.-]Hypothetical conserved protein 2.40.240.20 65 7 60 2.79 4.60
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dfuP00
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRH
PYKPKLQHIDFVRA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dfuP00
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRH
PYKPKLQHIDFVRA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:56

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"