CATH Domain: 1dfaA03 XML data for domain: 1dfaA03

Molscript image for 1dfaA03
1dfaA03
PDB coordinates for domain 1dfaA03

PDB 1dfa, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.28 Endonuclease I-creI
3.10.28.10 Homing endonucleases Gene3D
3.10.28.10.9
3.10.28.10.9.1
3.10.28.10.9.1.1
3.10.28.10.9.1.1.1
3.10.28.10.9.1.1.1.1

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Segment boundaries for domain 1dfaA03

Chopping figure for domain 1dfaA03
DomainStart PDB ResidueStop PDB Residue
1dfaA01 1 180
1dfaA01 416 454
1dfaA02 200 303
1dfaA03 304 398

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.10.28.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vs7A02 83.42 Desulfurococcus mobilisHoming endonuclease I-DmoI 3.10.28.10 78 15 77 2.30 2.95
1dq3A03 82.99 Pyrimidine metabolismPyrococcus furiosusPurine metabolismRibonucleoside-diphosphate reductaseRibonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 3.10.28.10 87 12 76 1.89 2.46
2vs7D02 82.23 Desulfurococcus mobilisHoming endonuclease I-DmoI 3.10.28.10 87 12 73 2.34 3.18
1usmA00 76.03 Transcriptional coactivatorThermus thermophilus 3.30.1360.20 77 3 60 2.82 4.70
2jtvA00 72.62 Rhodopseudomonas palustrisPutative uncharacterized protein 1.10.10.10 65 3 67 3.32 4.93
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1dfaA03
PSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAI
YMSGGDVLLNVLSKC
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1dfaA03
PSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAI
YMSGGDVLLNVLSKC
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 17 Aug 2007 11:37

Assigning to "3.10.28.10" based on similarity with "1vdeB03"

Flow stage update by auto on 17 Aug 2007 11:29

No in_process hits for Domain "1dfaA03" ready to be processed

Flow stage update by auto on 17 Aug 2007 11:29

NW result present for Domain "1dfaA03"

Flow stage update by auto on 16 Aug 2007 17:14

All required files are present for Domain "1dfaA03"

Flow stage update by auto on 16 Aug 2007 00:02

Beginning processing for Domain "1dfaA03"

Insertion by cuff on 15 Aug 2007 13:20

nice chopping