CATH Domain: 1deeG00 XML data for domain: 1deeG00

Molscript image for 1deeG00
1deeG00
PDB coordinates for domain 1deeG00

PDB 1dee, Chain G, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.420 Immunoglobulin FC, subunit C Gene3D
1.20.5.420.6
1.20.5.420.6.1
1.20.5.420.6.1.1
1.20.5.420.6.1.1.1
1.20.5.420.6.1.1.1.1

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Segment boundaries for domain 1deeG00

Chopping figure for domain 1deeG00
DomainStart PDB ResidueStop PDB Residue
1deeG00 1806 1856

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 1.20.5.420.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1t6oA00 89.45 Measles virus strain MoratenPhosphoprotein 1.10.8.10 49 12 88 1.59 1.80
2otkE00 89.34 1.20.5.420 43 58 84 2.00 2.37
2h5xA03 82.09 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.8.10 50 8 94 4.11 4.37
2oyoA01 79.94 Uncharacterised peroxidase-relatedDeinococcus geothermalis DSM 11300 1.20.5.810 52 9 86 4.01 4.63
1otrA00 79.76 Saccharomyces cerevisiaeProtein bindingUbiquitin-binding protein CUE2 1.10.8.10 49 8 84 3.20 3.80
1xvhA01 79.09 Extracellular matrix-binding protein ebhStaphylococcus aureus subsp. aureus MW2 1.20.5.420 64 5 75 3.25 4.33
3frhA01 79.08 16S rRNA methylaseEscherichia coli 1.10.8.10 58 7 82 3.62 4.37
2e5yA02 78.12 ATP synthase epsilon chainBacillus sp. PS3 1.20.5.440 45 2 70 3.39 4.80
2ztdA03 77.75 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.8.10 50 6 92 4.47 4.85
1oksA00 76.76 Measles virus strain EdmonstonPhosphoprotein 1.10.8.10 50 14 88 3.11 3.52
2prrA01 76.17 Ralstonia eutropha JMP134Alkylhydroperoxidase AhpD core:Uncharacterised peroxidase-related 1.20.5.810 52 3 86 4.30 4.97
1abzA00 76.04 1.20.860.10 38 5 68 2.80 4.08
2z4sA02 75.60 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 11 61 2.94 4.81
2qsiA02 71.75 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 1.20.5.510 27 7 50 2.52 4.94
1r8eA03 71.75 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 2 43 1.41 3.27
3c8vA04 68.32 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 5 37 1.09 2.93
2r44A01 68.20 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 11 35 1.52 4.31
2p10B02 68.20 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 7 35 1.50 4.25
1s5lX00 68.16 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 5 39 1.92 4.90
1d66B02 65.60 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 6 29 0.93 3.16
1mkmA02 62.37 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 27 0.93 3.39
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1deeG00
DQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1deeG00
FNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"