CATH Domain: 1ddgA01 XML data for domain: 1ddgA01

Molscript image for 1ddgA01
1ddgA01
PDB coordinates for domain 1ddgA01

PDB 1ddg, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.11
2.40.30.10.11.1
2.40.30.10.11.1.1
2.40.30.10.11.1.1.1
2.40.30.10.11.1.1.1.1

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Segment boundaries for domain 1ddgA01

Chopping figure for domain 1ddgA01
DomainStart PDB ResidueStop PDB Residue
1ddgA01 226 279
1ddgA01 385 444
1ddgA02 280 384
1ddgA03 445 599

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.40.30.10.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ja1A02 89.47 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 2.40.30.10 122 31 91 3.23 3.52
2piaA01 85.30 Burkholderia cepaciaPhthalate dioxygenase reductase 2.40.30.10 104 19 84 3.35 3.98
2rc5B01 83.08 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 22 78 3.13 3.98
1ep3B01 82.61 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 11 79 2.54 3.18
1qfjA01 82.42 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 19 73 2.17 2.94
1kzlA02 81.13 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 6 75 2.83 3.75
2gpjA01 81.03 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 17 77 2.10 2.72
2r6hA01 80.43 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 12 68 2.38 3.46
1i8dA01 79.71 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 12 77 3.34 4.33
1i8dC02 78.41 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 11 66 2.84 4.26
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ddgA01
IHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWPRLYSIASSQAEVENEVHVTVGVVRY
DVEGRARAGGASSFLADRVEEEGEVRVFIEHNDN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ddgA01
IHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWPRLYSIASSQAEVENEVHVTVGVVRY
DVEGRARAGGASSFLADRVEEEGEVRVFIEHNDN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:20

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"