CATH Domain: 1darA04 XML data for domain: 1darA04

Molscript image for 1darA04
1darA04
PDB coordinates for domain 1darA04

PDB 1dar, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.230 Ribosomal Protein S5; domain 2
3.30.230.10 Gene3D
3.30.230.10.7
3.30.230.10.7.1
3.30.230.10.7.1.1
3.30.230.10.7.1.1.1
3.30.230.10.7.1.1.1.1

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Segment boundaries for domain 1darA04

Chopping figure for domain 1darA04
DomainStart PDB ResidueStop PDB Residue
1darA01 1 286
1darA02 303 400
1darA03 433 483
1darA04 484 602
1darA05 603 689

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.30.230.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vqeE02 78.34 RibosomeSmall subunit ribosomal protein S5Thermus thermophilus HB830S ribosomal protein S5 3.30.230.10 75 21 59 2.41 4.04
1vi7A01 77.90 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.230.30 135 8 72 3.56 4.90
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1darA04
RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDI
KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVIL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1darA04
RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDI
KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVIL
BLAST against CATH

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Domain History Events (3)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1dar004" to "1darA04" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Domain assigned by lewis on 18 Jan 2007 19:03

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.

Insertion by lewis on 18 Jan 2007 19:03

Rechopping chains just before release v3.1.0 in order to fix missing fragments.