CATH Domain: 1d7kB01 XML data for domain: 1d7kB01

Molscript image for 1d7kB01
1d7kB01
PDB coordinates for domain 1d7kB01

PDB 1d7k, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.37 Lyase, Ornithine Decarboxylase; Chain A, domain 1
2.40.37.10 Lyase, Ornithine Decarboxylase; Chain A, domain 1 Gene3D
2.40.37.10.6
2.40.37.10.6.1
2.40.37.10.6.1.1
2.40.37.10.6.1.1.1
2.40.37.10.6.1.1.1.1

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Segment boundaries for domain 1d7kB01

Chopping figure for domain 1d7kB01
DomainStart PDB ResidueStop PDB Residue
1d7kB01 35 45
1d7kB01 280 409
1d7kB02 46 279

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.40.37.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2p3eA01 81.91 Diaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseLysine biosynthesisMetabolic pathwaysAquifex aeolicus 2.40.37.10 175 17 69 2.39 3.46
1knwA01 81.29 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseProtein binding 2.40.37.10 176 15 68 2.65 3.85
2o0tA01 81.05 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseMycobacterium tuberculosis 2.40.37.10 185 18 68 3.09 4.50
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1d7kB01
DDKDAFYVADLVASAFTLAVNIIAKKIVLKEQSSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDERYYSSSIW
GPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1d7kB01
DDKDAFYVADLVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDE
RYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:19

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"