CATH Domain: 1d3yB02 XML data for domain: 1d3yB02

Molscript image for 1d3yB02
1d3yB02
PDB coordinates for domain 1d3yB02

PDB 1d3y, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1360 Dna Topoisomerase Vi A Subunit; Chain: A, domain 2
3.40.1360.10 Gene3D
3.40.1360.10.3
3.40.1360.10.3.1
3.40.1360.10.3.1.1
3.40.1360.10.3.1.1.1
3.40.1360.10.3.1.1.1.1

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Segment boundaries for domain 1d3yB02

Chopping figure for domain 1d3yB02
DomainStart PDB ResidueStop PDB Residue
1d3yB01 72 142
1d3yB02 143 368

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.1360.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2zbkA02 86.41 Type II DNA topoisomerase VI subunit ASulfolobus shibatae 3.40.1360.10 226 33 92 1.49 1.62
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1d3yB02
EDGSSVVGPLKIIEETPEGELVVDCTKLGTGAYNIPNDVTKLNLETDADFILAIETSGMFARLNAERFWDKHNCILVSLK
GVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGKLSIPAARLIGVTPQDIIDYDLPTHPLKEQDIKRIKD
GLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIKDESTWL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1d3yB02
EDGSSVVGPLKIIEETPEGELVVDCTKLGTGAYNIPNDVTKLNLETDADFILAIETSGMFARLNAERFWDKHNCILVSLK
GVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDLPTHPLK
EQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIKDESTWL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:19

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"