CATH Domain: 1d3bC00 XML data for domain: 1d3bC00

Molscript image for 1d3bC00
1d3bC00
PDB coordinates for domain 1d3bC00

PDB 1d3b, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.5
2.30.30.100.5.1
2.30.30.100.5.1.1
2.30.30.100.5.1.1.1
2.30.30.100.5.1.1.1.1

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Segment boundaries for domain 1d3bC00

Chopping figure for domain 1d3bC00
DomainStart PDB ResidueStop PDB Residue
1d3bC00 5 75

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.30.30.100.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1b34A00 91.48 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 29 88 1.10 1.24
1ljoA00 91.37 Archaeoglobus fulgidusSnRNP, putative 2.30.30.100 75 21 93 2.75 2.95
1n9rB00 90.12 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 17 94 2.42 2.56
1b34B00 89.32 SpliceosomeSpliceosomal complexSmall nuclear ribonucleoprotein Sm D2Homo sapiensSmall nuclear ribonucleoprotein D2 2.30.30.100 74 12 89 1.72 1.93
1d3bB00 88.41 Small nuclear ribonucleoprotein-associated proteins B and B'Spliceosomal complexU7 snRNPHomo sapiensProtein binding 2.30.30.100 81 12 83 1.87 2.23
3bw1A00 88.00 U6 snRNA-associated Sm-like protein LSm3Small nucleolar ribonucleoprotein complexRNA degradationNucleolusRNA binding 2.30.30.100 86 19 82 1.75 2.12
1ib8A02 83.62 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 14 88 2.41 2.72
1nh2D02 82.49 Transcription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein bindingBasal transcription factorsTranscription initiation factor IIA small subunit 2.30.18.10 48 18 63 2.37 3.74
1nvpD02 80.87 Basal transcription factorsTranscription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein homodimerization activityTranscription coactivator activity 2.30.18.10 46 13 60 2.10 3.47
2k57A00 79.92 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 9 73 3.16 4.31
1biaA03 79.55 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 6 66 2.69 4.06
1pm3A00 78.64 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 2.30.30.240 69 7 76 3.68 4.84
1mhnA00 78.01 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 10 77 3.64 4.70
2g3rA01 77.28 CytoplasmHomo sapiensTumor suppressor p53-binding protein 1Protein binding 2.30.30.140 53 11 70 3.03 4.30
1v76B00 77.17 Pyrococcus horikoshiiRibonuclease P protein component 1Ribonuclease P subunit P29 [EC:3.1.26.5] 2.30.30.210 91 9 62 2.98 4.76
2f1lA02 75.87 Pseudomonas aeruginosaRibosome maturation factor rimM16S rRNA processing protein RimM 2.30.30.240 72 8 76 3.65 4.78
1sf9A02 75.81 Bacillus subtilisUncharacterized protein yfhH 2.30.30.340 54 1 74 3.38 4.53
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1d3bC00
VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1d3bC00
MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"