CATH Domain: 1d3bB00 XML data for domain: 1d3bB00

Molscript image for 1d3bB00
1d3bB00
PDB coordinates for domain 1d3bB00

PDB 1d3b, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.9
2.30.30.100.9.1
2.30.30.100.9.1.1
2.30.30.100.9.1.1.1
2.30.30.100.9.1.1.1.1

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Segment boundaries for domain 1d3bB00

Chopping figure for domain 1d3bB00
DomainStart PDB ResidueStop PDB Residue
1d3bB00 7 87

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.30.30.100.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n9rB00 88.50 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 20 83 1.85 2.20
1b34A00 88.43 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 18 87 2.77 3.16
1b34B00 87.88 SpliceosomeSpliceosomal complexSmall nuclear ribonucleoprotein Sm D2Homo sapiensSmall nuclear ribonucleoprotein D2 2.30.30.100 74 18 81 2.18 2.68
1ib8A02 80.72 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 13 74 2.48 3.35
1nh2D02 78.61 Transcription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein bindingBasal transcription factorsTranscription initiation factor IIA small subunit 2.30.18.10 48 8 55 2.33 4.19
1biaA03 78.37 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 17 58 2.65 4.57
2k57A00 78.18 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 9 65 3.09 4.72
1nvpD02 77.54 Basal transcription factorsTranscription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein homodimerization activityTranscription coactivator activity 2.30.18.10 46 13 53 2.14 4.03
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1d3bB00
SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP
P
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1d3bB00
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM
TVEGPPPKDTG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"