CATH Domain: 1d2nA02 XML data for domain: 1d2nA02

Molscript image for 1d2nA02
1d2nA02
PDB coordinates for domain 1d2nA02

PDB 1d2n, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.7
1.10.8.60.7.1
1.10.8.60.7.1.1
1.10.8.60.7.1.1.1
1.10.8.60.7.1.1.1.1

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Segment boundaries for domain 1d2nA02

Chopping figure for domain 1d2nA02
DomainStart PDB ResidueStop PDB Residue
1d2nA01 505 676
1d2nA02 677 743

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.10.8.60.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sxjC02 78.35 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 14 65 2.87 4.40
1r7rA06 77.16 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 58 5 85 4.19 4.93
1e32A04 76.91 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 87 13 74 3.41 4.56
1tkeA03 76.85 Aminoacyl-tRNA biosynthesisThreonyl-tRNA synthetaseZinc ion bindingThreonyl-tRNA synthetase [EC:6.1.1.3]RNA binding 3.30.54.20 58 6 70 3.29 4.69
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1d2nA02
NIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1d2nA02
NIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:19

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"