CATH Domain: 1cyoA00 XML data for domain: 1cyoA00

Molscript image for 1cyoA00
1cyoA00
PDB coordinates for domain 1cyoA00

PDB 1cyo, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.120 Flavocytochrome B2; Chain A, domain 1
3.10.120.10 Flavocytochrome B2, subunit A, domain 1 Gene3D
3.10.120.10.1
3.10.120.10.1.1
3.10.120.10.1.1.1
3.10.120.10.1.1.1.1
3.10.120.10.1.1.1.1.1

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Segment boundaries for domain 1cyoA00

Chopping figure for domain 1cyoA00
DomainStart PDB ResidueStop PDB Residue
1cyoA00 1 88

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.10.120.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ibjA00 94.77 Musca domesticaCytochrome b5 3.10.120.10 86 59 97 1.54 1.58
1cxyA00 91.74 Ectothiorhodospira shaposhnikoviiSoluble cytochrome b558 3.10.120.10 81 32 87 1.26 1.44
1x3xA00 90.00 Ascaris suumCytochrome b5 3.10.120.10 82 34 88 1.72 1.94
1mj4A00 89.67 Sulfite oxidase activitySulfur metabolismHomo sapiensSulfite oxidase, mitochondrialSulfite oxidase [EC:1.8.3.1] 3.10.120.10 79 31 86 1.38 1.60
3ks0A00 88.50 L-lactate dehydrogenase (cytochrome) activityL-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]Pyruvate metabolismLactate metabolic processMetabolic pathways 3.10.120.10 92 29 93 2.67 2.86
1j03A00 80.32 Probable steroid-binding protein 3Arabidopsis thaliana 3.10.120.10 102 14 74 3.69 4.95
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1cyoA00
SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH
PDDRSKIT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1cyoA00
SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH
PDDRSKITKPSES
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1cyo000" to "1cyoA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"