CATH Domain: 1cukA03 XML data for domain: 1cukA03

Molscript image for 1cukA03
1cukA03
PDB coordinates for domain 1cukA03

PDB 1cuk, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain Gene3D
1.10.8.10.4
1.10.8.10.4.1
1.10.8.10.4.1.1
1.10.8.10.4.1.1.1
1.10.8.10.4.1.1.1.1

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Segment boundaries for domain 1cukA03

Chopping figure for domain 1cukA03
DomainStart PDB ResidueStop PDB Residue
1cukA01 1 66
1cukA02 67 142
1cukA03 156 203

Structural Neighbourhood (25 entries)

There are 25 matching structural neighberhood comparisons for CATH ID 1.10.8.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 25 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ztdA03 92.58 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.8.10 50 22 92 1.21 1.32
2h5xA03 92.06 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.8.10 50 22 92 1.20 1.30
1bvsF03 90.64 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.8.10 45 20 93 2.10 2.24
1ixrB03 90.55 Homologous recombinationThermus thermophilus HB8Holliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAProtein binding 1.10.8.10 53 37 90 2.36 2.61
1dv0A00 85.83 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 45 22 79 1.72 2.17
1ifyA00 85.55 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 49 10 83 1.93 2.31
1otrA00 85.13 Saccharomyces cerevisiaeProtein bindingUbiquitin-binding protein CUE2 1.10.8.10 49 6 81 1.98 2.43
1tteA02 81.19 Ubiquitin-conjugating enzyme E2-24 kDaIdentical protein bindingProtein polyubiquitinationUbiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:6.3.2.19]Ubiquitin mediated proteolysis 1.10.8.10 57 6 80 2.71 3.36
1q02A00 81.01 Positive regulation of transcription from RNA polymerase II promoterProtein localizationProtein kinase C bindingCytosolUbiquitin binding 1.10.8.10 52 14 78 2.88 3.65
1okkD01 80.98 Cell division protein ftsYThermus aquaticusProtein binding 1.20.120.140 58 14 79 2.63 3.32
2j5yA00 80.74 Peptostreptococcal albumin-binding proteinFinegoldia magna 1.10.8.40 61 22 77 3.30 4.28
1a5tA02 80.40 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.10 40 7 81 2.81 3.46
1efuB01 80.10 CytoplasmMembraneZinc ion bindingElongation factor EF-TsElongation factor Ts 1.10.8.10 54 10 77 3.03 3.90
1v92A00 79.99 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 1.10.8.10 46 17 89 3.84 4.29
1djxB01 79.77 Calcium ion bindingCalcium signaling pathwayPhosphatidylinositol signaling systemRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 52 16 80 3.72 4.61
1j09A04 79.23 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 1.10.8.70 48 14 83 4.11 4.93
1wivA00 78.52 Embryo development ending in seed dormancyUbiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15]Ubiquitin carboxyl-terminal hydrolase 14Arabidopsis thalianaUbiquitin-specific protease activity 1.10.8.10 73 18 56 2.28 4.06
3b7nA01 78.14 CRAL-TRIO domain-containing protein YKL091CNucleusSaccharomyces cerevisiae 1.10.8.20 79 10 60 2.76 4.54
1sxjE02 77.83 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 10 65 2.76 4.21
1l8qA02 75.55 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 2 89 3.36 3.74
3bosA02 75.43 DnaA-homolog proteinShewanella amazonensis SB2BRegulatory inactivation of DnaA Hda protein 1.10.8.60 59 16 69 3.29 4.73
2hwjA02 74.65 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 1.10.8.10 59 18 74 3.03 4.06
2qq8A02 74.18 Homo sapiensTBC1 domain family member 14 1.10.8.270 94 6 50 2.39 4.78
1jr3D03 73.92 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 4 53 2.60 4.86
1r7rA06 72.58 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 58 8 43 1.55 3.60
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Displaying entries 1 to 25 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1cukA03
TDDAEQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1cukA03
TDDAEQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1cuk003" to "1cukA03" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:18

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"