CATH Domain: 1cukA02 XML data for domain: 1cukA02

Molscript image for 1cukA02
1cukA02
PDB coordinates for domain 1cukA02

PDB 1cuk, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.20 5' to 3' exonuclease, C-terminal subdomain Gene3D
1.10.150.20.2
1.10.150.20.2.1
1.10.150.20.2.1.1
1.10.150.20.2.1.1.1
1.10.150.20.2.1.1.1.1

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Segment boundaries for domain 1cukA02

Chopping figure for domain 1cukA02
DomainStart PDB ResidueStop PDB Residue
1cukA01 1 66
1cukA02 67 142
1cukA03 156 203

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 1.10.150.20.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ztdA02 92.85 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 1.10.150.20 68 38 88 1.15 1.30
1bvsA02 91.32 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.150.20 70 35 92 1.98 2.15
1u9lB00 84.71 Escherichia coli O157:H7N utilization substance protein ATranscription elongation protein nusA 1.10.150.20 70 11 92 3.86 4.19
1dgsA06 83.68 DNA ligaseThermus filiformis 1.10.150.20 83 18 85 3.89 4.55
1wcnA01 83.04 N utilization substance protein ATranscription elongation protein nusAEscherichia coli K-12 1.10.150.20 60 16 78 2.52 3.19
1z1vA00 81.38 Protein kinase regulator activitySAM domain bindingProtein STE50Signal transduction involved in filamentous growthPheromone-dependent signal transduction involved in conjugation with cellular fusion 1.10.150.50 70 10 84 2.64 3.13
1xo1A01 81.01 Enterobacteria phage T5Exodeoxyribonuclease 1.10.150.20 80 9 73 2.97 4.03
1go3F01 80.34 Pyrimidine metabolismPurine metabolismMethanocaldococcus jannaschiiDNA-directed RNA polymerase subunit F [EC:2.7.7.6]Uncharacterized protein MJ0039 1.10.150.80 60 18 72 3.05 4.21
1sv0D00 79.64 ETS-domain lackingNegative regulation of transcriptionRegulation of epidermal growth factor receptor signaling pathwayRegulation of Ras protein signal transductionDrosophila melanogaster 1.10.150.50 81 9 77 3.59 4.62
1dxsA00 79.45 DNA damage response, signal transduction resulting in induction of apoptosisTranscription factor bindingProtein bindingPositive regulation of transcription, DNA-dependentMismatch repair 1.10.150.50 57 15 72 2.38 3.29
1x66A01 78.96 Sequence-specific DNA binding transcription factor activityHemostasisOrgan morphogenesisHomo sapiensFriend leukemia integration 1 transcription factor 1.10.150.50 70 4 80 3.95 4.92
3h8mA00 78.85 EphA7 [EC:2.7.10.1]Homo sapiensEphrin type-A receptor 7Axon guidance 1.10.150.50 71 5 84 3.72 4.42
1uaaA02 78.06 ATP-dependent DNA helicase Rep [EC:3.6.1.-]ATP-dependent DNA helicase repEscherichia coli K-12 1.10.10.160 74 5 86 3.70 4.26
2dflA01 77.66 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 15 78 3.21 4.07
1dgsA05 77.52 DNA ligaseThermus filiformis 1.10.150.20 69 8 80 3.16 3.94
1kftA00 77.46 Nucleotide excision repairEscherichia coli O157:H7Excinuclease ABC subunit CUvrABC system protein C 1.10.150.20 56 30 69 3.24 4.65
1pk3A00 77.36 PRC1 complexIdentical protein bindingNegative regulation of transcriptionPolycomb protein ScmAxonogenesis 1.10.150.50 76 7 78 2.93 3.71
2a19A02 75.94 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 complexEukaryotic translation initiation factor 2 subunit alphaSaccharomyces cerevisiae 1.10.150.190 85 5 75 3.63 4.82
1oxjA01 75.68 Cytoplasmic mRNA processing bodyNuclear-transcribed mRNA poly(A) tail shorteningEstablishment of RNA localizationProtein SmaugDrosophila melanogaster 1.10.150.50 61 4 75 3.54 4.72
1x9xA00 74.98 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 9 78 3.07 3.89
1y88A02 73.31 Archaeoglobus fulgidusUncharacterized protein AF_1548 1.10.150.20 59 8 76 3.63 4.76
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1cukA02
QERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1cukA02
QERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTP
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1cuk002" to "1cukA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:18

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"