CATH Domain: 1cqxA03 XML data for domain: 1cqxA03

Molscript image for 1cqxA03
1cqxA03
PDB coordinates for domain 1cqxA03

PDB 1cqx, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module Gene3D
3.40.50.80.8
3.40.50.80.8.1
3.40.50.80.8.1.1
3.40.50.80.8.1.1.1
3.40.50.80.8.1.1.1.1

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Segment boundaries for domain 1cqxA03

Chopping figure for domain 1cqxA03
DomainStart PDB ResidueStop PDB Residue
1cqxA01 1 150
1cqxA02 151 261
1cqxA03 262 403

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.50.80.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1qfjA02 85.36 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 3.40.50.80 135 22 92 3.29 3.57
1ep3B02 82.85 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 3.40.50.80 117 18 79 2.28 2.87
2r6hA02 81.93 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 24 76 2.40 3.16
2piaA02 80.71 Burkholderia cepaciaPhthalate dioxygenase reductase 3.40.50.80 121 23 83 3.56 4.28
1dnpA01 75.78 Protein-chromophore linkageDeoxyribodipyrimidine photo-lyaseDeoxyribodipyrimidine photo-lyase activityProtein bindingDeoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 3.40.50.620 130 9 78 3.76 4.81
1mioB04 74.30 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 9 66 3.21 4.80
2x5oA01 73.02 D-Glutamine and D-glutamate metabolismPeptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylmuramoylalanine--D-glutamate ligaseUDP-N-acetylmuramoylalanine-D-glutamate ligase activity 3.40.50.720 92 11 64 3.22 4.97
1f3lA01 72.73 Rattus norvegicusProtein arginine N-methyltransferase 3 [EC:2.1.1.-]Protein arginine N-methyltransferase 3Peptidyl-arginine methylation, to asymmetrical-dimethyl arginineProtein-arginine omega-N asymmetric methyltransferase activity 3.40.50.150 143 4 69 3.46 5.00
3eagA01 72.20 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 17 61 2.75 4.44
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1cqxA03
DVDAKTPIVLISGGVGLTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGR
DYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYEVFGPDLFAE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1cqxA03
DVDAKTPIVLISGGVGLTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGR
DYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYEVFGPDLFAE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:17

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"