CATH Domain: 1cqxA02 XML data for domain: 1cqxA02

Molscript image for 1cqxA02
1cqxA02
PDB coordinates for domain 1cqxA02

PDB 1cqx, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.1
2.40.30.10.1.1
2.40.30.10.1.1.1
2.40.30.10.1.1.1.1
2.40.30.10.1.1.1.1.1

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Segment boundaries for domain 1cqxA02

Chopping figure for domain 1cqxA02
DomainStart PDB ResidueStop PDB Residue
1cqxA01 1 150
1cqxA02 151 261
1cqxA03 262 403

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 2.40.30.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2piaA01 88.74 Burkholderia cepaciaPhthalate dioxygenase reductase 2.40.30.10 104 27 89 1.96 2.20
1umkA01 86.75 Amino sugar and nucleotide sugar metabolismHemoglobin complexNADH-cytochrome b5 reductase 3Cytochrome-b5 reductase [EC:1.6.2.2]Homo sapiens 2.40.30.10 115 13 89 2.04 2.28
2gpjA01 85.61 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 12 88 2.45 2.77
1qfjA01 85.23 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 16 81 2.14 2.64
1f20A03 85.20 Response to heatNegative regulation of insulin secretionSynapseAmino acid bindingNitric oxide biosynthetic process 2.40.30.10 113 14 87 2.61 2.98
1ddgA01 84.61 Sulfur metabolismMetabolic pathwaysSulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]Sulfite reductase [NADPH] flavoprotein alpha-componentProtein binding 2.40.30.10 114 13 85 2.30 2.70
2bmwA01 84.55 Nostoc sp. PCC 7119Flavin adenine dinucleotide bindingFerredoxin--NADP reductaseProtein bindingFerredoxin-NADP+ reductase activity 2.40.30.10 128 14 80 2.39 2.97
1krhA02 84.51 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 2.40.30.10 97 24 87 2.11 2.41
1ep3B01 84.48 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 17 87 2.39 2.73
2qdxA01 84.28 Pseudomonas aeruginosaFerredoxin--NADP+ reductase [EC:1.18.1.2]Ferredoxin--NADP+ reductase 2.40.30.10 95 18 85 2.15 2.51
1ja1A02 83.45 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 2.40.30.10 122 12 81 2.35 2.90
2r6hA01 82.61 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 19 73 2.12 2.87
1kzlA02 82.29 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 14 81 3.62 4.46
1i8dA01 81.61 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 13 77 3.19 4.12
2rc5B01 81.37 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 16 73 2.99 4.06
1mrzB02 75.17 Riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]Riboflavin metabolismThermotoga maritimaRiboflavin kinase/FMN adenylyltransferaseMetabolic pathways 2.40.30.30 112 6 69 3.32 4.77
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1cqxA02
WKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGP
QPPGYVSNLLHDHVNVGDQVKLAAPYGSFHI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1cqxA02
WKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGP
QPPGYVSNLLHDHVNVGDQVKLAAPYGSFHI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:17

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"