CATH Domain: 1cpzA00 XML data for domain: 1cpzA00

Molscript image for 1cpzA00
1cpzA00
PDB coordinates for domain 1cpzA00

PDB 1cpz, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.15
3.30.70.100.15.2
3.30.70.100.15.2.1
3.30.70.100.15.2.1.1
3.30.70.100.15.2.1.1.1

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Segment boundaries for domain 1cpzA00

Chopping figure for domain 1cpzA00
DomainStart PDB ResidueStop PDB Residue
1cpzA00 1 68

Structural Neighbourhood (61 entries)

There are 61 matching structural neighberhood comparisons for CATH ID 3.30.70.100.15.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 61 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2g9oA00 85.03 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 28 96 2.68 2.79
2kt2A00 84.50 Mercuric reductasePseudomonas aeruginosaMercuric reductase [EC:1.16.1.1] 3.30.70.100 69 30 89 2.31 2.58
1mwyA00 84.45 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Detoxification of zinc ionLead, cadmium, zinc and mercury-transporting ATPaseEscherichia coli K-12Response to cadmium ion 3.30.70.100 73 19 94 2.57 2.71
2ofhX00 83.51 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 30 92 2.22 2.41
1in0A01 81.87 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 5 87 3.11 3.57
2w25A02 80.80 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 12 81 3.59 4.41
1vi7A02 80.62 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 11 88 3.27 3.70
1utaA00 80.24 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 6 90 3.79 4.17
2nyiA01 80.11 3.30.70.260 77 10 92 3.83 4.15
2f1fA01 80.10 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 6 88 3.36 3.79
2hfvA01 79.74 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 9 84 3.41 4.04
1eayD00 79.03 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 13 88 3.52 3.99
2dy1A03 78.68 Thermus thermophilus HB8Elongation factor EF-G [EC:3.6.5.3]Elongation factor G (EF-G-2) 3.30.70.870 76 10 94 4.24 4.47
2qmwA03 78.08 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 6 84 3.65 4.32
1y7pB01 78.07 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 6 83 3.47 4.14
2fmrA00 77.90 CytoplasmSoluble fractionNucleolusHomo sapiensFragile X mental retardation 1 protein 3.30.1370.10 65 7 79 3.53 4.46
1u8sA02 77.90 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 84 3 88 4.00 4.54
2j8sA07 77.89 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1440 94 3 78 3.67 4.66
2rb7A02 77.31 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 11 72 3.57 4.93
1u8sA01 77.22 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 11 86 4.27 4.96
1u0sA00 77.14 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 9 82 3.65 4.42
1xtzA02 77.09 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 3 76 3.28 4.30
2pd1A01 76.92 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 6 79 3.54 4.45
1harA02 76.84 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 10 84 2.96 3.51
1zpvB00 76.80 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 15 90 4.10 4.55
1nm2A01 76.71 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 11 81 3.83 4.68
1fjeB01 76.71 NucleolinMesocricetus auratus 3.30.70.330 81 7 83 3.91 4.66
2rhsD06 76.50 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 10 72 2.99 4.11
1no8A00 76.50 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 7 89 4.30 4.79
1o8bA02 76.49 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 13 79 3.18 4.01
1lwcB02 76.25 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 87 10 82 3.86 4.66
1rwuA00 76.15 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 9 73 2.94 4.00
1s1tA02 76.13 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 93 11 79 3.91 4.91
1sc6A03 76.00 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.30.70.260 79 3 86 3.77 4.38
1b4bA00 75.89 Geobacillus stearothermophilusArginine repressor 3.30.1360.40 71 1 77 3.74 4.80
2do0A01 75.83 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 2 83 3.65 4.39
1l3kA02 75.83 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 10 84 3.92 4.63
2wriY03 75.70 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 7 94 3.81 4.02
1cvjA01 75.59 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 11 85 3.23 3.77
2pehA01 75.54 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 5 87 4.07 4.63
1mlaA01 75.43 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 8 84 3.61 4.28
1lfwA03 75.43 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 6 73 3.32 4.49
1fxlA01 75.42 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 9 77 3.21 4.12
1x5uA01 75.35 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 5 81 3.46 4.26
1b7yB06 75.35 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 9 74 3.54 4.76
2zd1A02 75.29 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 94 9 79 3.63 4.55
1l3kA01 75.14 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 7 82 3.67 4.47
1fxlA02 75.10 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 6 81 3.59 4.39
2nyiA02 75.08 3.30.70.260 89 10 82 4.10 5.00
1rk8A00 75.02 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 10 80 4.02 5.00
1m1hA01 74.97 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 10 70 3.13 4.47
2errA01 74.58 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 7 80 3.74 4.63
1yx2A02 74.54 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 5 76 3.78 4.94
1kp6A00 74.38 Ustilago maydis virus P6KP6 killer toxin 3.30.70.440 79 9 78 3.83 4.88
2hiyA02 74.37 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1260 91 5 78 3.76 4.82
2qfjA02 74.07 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 10 78 3.46 4.43
1nh8A03 73.78 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.30.70.120 67 13 81 3.87 4.73
2j8sA03 73.28 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 7 73 3.47 4.75
1cvjG02 73.19 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 10 79 3.88 4.88
1x5oA01 73.01 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 11 82 3.76 4.55
2dgsA01 72.35 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 9 82 3.77 4.60
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Displaying entries 1 to 61 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1cpzA00
AQEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1cpzA00
AQEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"